Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq656 174 2e-38 seq761 95.1 1e-14 seq197 84.2 3e-11 >seq656 Length=490082 Score = 174 bits (192), Expect = 2e-38 Identities = 952/1497 (64%), Gaps = 68/1497 (5%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | || || |||| || || ||||| Sbjct 300715 CTTCATCTCCTCGTTCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGAC 300656 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | |||| || | |||||||| | ||||||| || | Sbjct 300655 GATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 300596 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 300595 GGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAG 300536 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| ||||| || | | |||||| | || Sbjct 300535 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTC 300476 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||| | ||| | ||| || Sbjct 300475 GGTGGGAGTCTTCT-CCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAG--CC 300419 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 || | ||||| || | ||| | || | |||| ||| ||||| |||||||||| || Sbjct 300418 TTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGC 300359 Query 106198 GTGATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAA 106249 || || ||||| || ||||| | |||| || | || || ||||| Sbjct 300358 GTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTT-------- 300307 Query 106250 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 || || | ||| || || || || | || || | ||| || || || | || || Sbjct 300306 TCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATG 300247 Query 106310 GGTCTGTGTCGCATATTAGACTT-TC-GCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 || | ||| || | || ||| | || || | | ||||| || | || | |||| Sbjct 300246 GGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT--ACGGGGTAGTAGTTGATCTCAA 300189 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 ||| ||| || || || | | ||| |||| || || | | | || | Sbjct 300188 TGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCGA 300129 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 |||| || ||| |||| ||| | |||||||| || |||| || || || | Sbjct 300128 AAGTCCG---CTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCG 300072 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || ||| ||||| |||||||| | || || || || | |||| | ||| || | Sbjct 300071 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGG 300012 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| |||| ||||| ||||| ||||||| || |||||||| ||||||||||||| Sbjct 300011 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCG 299952 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 |||| || |||||||| |||| || || || | ||| || | | | | || || | Sbjct 299951 TCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT-TCACCACC 299893 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || ||| || ||| || || || |||||||| ||||||||||| ||| | Sbjct 299892 TTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTC-CCCCCA 299834 Query 106727 GC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CC 106783 || ||| || || || || || ||||| | || ||||| | || | | Sbjct 299833 GCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCA--GTCCTGGTTGCTC 299776 Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 || || | ||||||||| ||||| || ||||||| || | || || ||||| | Sbjct 299775 TCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTC 299716 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCA 106902 ||| || | ||| ||| || | | ||| ||||| || | | ||| |||||| Sbjct 299715 TGCTCCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCA 299657 Query 106903 TGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCG 106959 ||||| || || | |||| | |||| ||| ||| | || | |||||||| Sbjct 299656 CGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCG 299597 Query 106960 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 107019 || ||| ||| | || || ||||| || | | |||| || | || || || || Sbjct 299596 GGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCC 299537 Query 107020 CCGAATACGAGATTTATTGGCTCTCA---CATC--ATGGATGT-----GCATCCCAATAC 107069 | ||| || |||| || ||| ||| | | || || || | Sbjct 299536 -------AGCGATGTA---GCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCC 299487 Query 107070 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 107129 | ||||| | || || || | || |||| | | || || | ||||| || | ||| Sbjct 299486 CGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGC 299427 Query 107130 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGC 107187 ||| ||||| |||||| |||||||| ||||||| ||||| | ||| || || || Sbjct 299426 TGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTG--GTCCCGGC 299369 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 107246 |||||||||||||| | ||||| ||||| || | | |||| | || ||| |||| Sbjct 299368 GTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCT 299310 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | | | | |||||||||| |||||||| |||| | ||| | ||| | ||||| Sbjct 299309 CAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGT 299253 >seq761 Length=414005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| || ||| ||| || |||| |||||||| |||| ||| || || || || Sbjct 275177 CTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCC 275236 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || |||||||||||||||||||| || || Sbjct 275237 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACC 275296 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||| ||||| |||| | || || | ||||| Sbjct 275297 CGTCTCTGTCTGCGACTCAATGATGGCGTACCACA 275331 >seq197 Length=1194064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 117307 ATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATA 117366 || |||||||| |||||| ||||| |||||||| || | |||||| | ||| || || Sbjct 1112698 ATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTTAGCCAGTAGATG 1112639 Query 117367 GC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTC 117425 || ||| ||||| || ||||||||||| ||||| ||| ||||| || | || ||||| Sbjct 1112638 GCAGCA-AATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 1112580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589912517097160