Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq656 170 2e-37 seq197 91.5 2e-13 seq761 82.4 9e-11 >seq656 Length=490082 Score = 170 bits (188), Expect = 2e-37 Identities = 570/883 (65%), Gaps = 4/883 (0%) Strand=Plus/Minus Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 || ||||| || |||| || || || || | |||| || ||||||||||||||| Sbjct 300021 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGC 299962 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || || ||||| ||||||| || ||||| | | |||||| | |||| Sbjct 299961 ATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCC 299902 Query 48075 TTTA-TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTC 48133 || | | | || | | | | || | ||| |||||||| || | ||||||||| || Sbjct 299901 TTCACCACCTTCTTCACCCTCCCT-TCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTC 299843 Query 48134 ATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCT 48192 ||||| | ||| | || | ||| ||||| || || |||||||||| ||||| |||| Sbjct 299842 CTCCCCCCAGCAC-TCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCT 299784 Query 48193 CATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCC 48252 | | | ||||| |||| || | || || ||||| | || |||| || | Sbjct 299783 GGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTC 299724 Query 48253 TAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAG 48312 | | ||| | || || || || | ||| | || || || || ||||| | | |||| Sbjct 299723 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAA 299664 Query 48313 CATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTA 48372 ||||| || || | || || || | | || ||||| || || || || || || | Sbjct 299663 AGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAA 299604 Query 48373 TATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCAT 48432 ||| | ||| || ||||| ||||| | | ||| ||||| | ||||| || | || | Sbjct 299603 CATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGT 299544 Query 48433 TGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCAC 48492 | || || | || || || ||| | | ||| || || | | | || || || | Sbjct 299543 TAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGC 299484 Query 48493 CTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTAT 48552 | || ||| || || || || ||| | || ||||| || || || || || || || | Sbjct 299483 CAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGT 299424 Query 48553 CATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA 48612 |||| |||| | || || || || |||| |||| | || || | || | Sbjct 299423 CATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGA 299364 Query 48613 ATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAA 48672 | | ||||| || || || | ||||| ||||| || | || || || || ||||| Sbjct 299363 AGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGG 299304 Query 48673 CAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732 | | || || || | || ||||| | || || | ||| | ||| | || || | Sbjct 299303 CGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGC 299244 Query 48733 TTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAA 48792 || | | ||| || || |||| ||||| || |||| ||||| || |||| Sbjct 299243 GCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAA 299184 Query 48793 AATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 | ||||||| ||||| || | |||| ||| || || ||||| Sbjct 299183 AGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATT 299141 >seq197 Length=1194064 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | |||| || ||||| ||| |||| ||||||||||| ||||||||||| Sbjct 1113819 CATCACTCCAAATCTTTGGTACTCGGCTACTTTTTTCTCAAAGAAATTTGTTTTTCCCTC 1113760 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATA 18761 || || || | ||||| || ||||| ||||||| ||||| || Sbjct 1113759 TAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTA 1113715 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || || | |||||| || || || | || ||||| || ||||| || ||| Sbjct 1112710 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTT 1112651 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | |||| | || | ||||||||| || || ||||| || || ||||| ||||||||||| Sbjct 1112650 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 1112591 Query 19105 ACTAGTC 19111 || |||| Sbjct 1112590 ACCAGTC 1112584 >seq761 Length=414005 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 ||||||| || |||||| | || ||||| | ||||||| || |||| |||||| || Sbjct 275190 GTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGG 275249 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || | |||| || ||||||||||| ||||| | || || || || ||| |||| Sbjct 275250 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCTGC 275309 Query 48042 GATTCAATGAT 48052 || |||||||| Sbjct 275310 GACTCAATGAT 275320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562043742932760