Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq186 181 9e-40 seq1004 109 4e-18 seq489 100 2e-15 seq5 98.7 8e-15 >seq186 Length=1290931 Score = 181 bits (200), Expect = 9e-40 Identities = 403/591 (68%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || ||||||||| |||| || |||| ||||| Sbjct 651105 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGAAAAGTG 651164 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| |||||||| ||||| || ||||| |||||| | || || || Sbjct 651165 GAAATCATTGCCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCTTTACTGAC 651224 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAA 550170 || || | | | | |||| ||||| || || | |||| ||| || || || || || Sbjct 651225 ACAGAGAGACTCA-TTGGAGATGCTGCTAAGAACCAAGTTGCCA-TG--AACCCCACAAA 651280 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | |||||||| ||||| | ||||||||||| ||| |||| | ||||| Sbjct 651281 CACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAG 651340 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || ||||| | ||||| ||| | | || |||| ||| || || | | | || Sbjct 651341 TGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCC-CAAAGTCCAGG 651399 Query 550291 T--ACTCATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATCTATGG 550343 | | | || |||| | |||||| || | || || | ||||| || |||| Sbjct 651400 TGGAAT-AT-AAGG----GAGAAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGG 651453 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTA-CGGATGCA 550402 | | | ||||||| | ||| ||| || ||| |||| ||| | || || |||| Sbjct 651454 TCCTGGTTAAAATGAGAGAAATAGCTGAGGCCTTT-TTGGGACAGAGGGTATCGAATGCG 651512 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || || || ||||| || ||||| || || || | ||||| || || ||||||||| Sbjct 651513 GTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGA 651572 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 || | ||||| |||||||| ||||| || ||||| || || || || || |||| Sbjct 651573 GTAATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCC 651632 Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 ||||| || |||||| ||| ||| | ||||| |||||||||||| Sbjct 651633 TATGGCCTGGATAAAGGTAAAAGAGGAGAGCGCAATGTTCTCATCTTTGAT 651683 Score = 125 bits (138), Expect = 6e-23 Identities = 409/629 (65%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| | || ||| | |||||||| ||||| | | | || | || | ||||| Sbjct 651930 ATTGAGATTGACTCACTGTTTGAGGGGATTGACTTTTACACATCAATCACAAGGGCACGC 651989 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-T 552082 ||||| || | ||||| ||||| || |||| | || || || ||| |||| | Sbjct 651990 TTTGAGGAACTAAACTCTGACCTCTTCAGGGGAACACTGGAGCCTGTTGAA-AAGTCCCT 652048 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | |||| | || | ||||||||||| | ||||||||||| | |||||||| ||||| Sbjct 652049 ACAAGATGCTAAACTGGATAAATCCAAGATTCATGAAATTGTCTTAGTTGGTGGTTCTAC 652108 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||| || ||||| | | | || || |||||||||| | | | || | Sbjct 652109 AAGAATCCCCAAAATCCAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTGAACAA 652168 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--T 552260 ||| | || || ||||| || || ||||| ||||| ||| | || || ||||| || | Sbjct 652169 GAGTATCAACCCTGATGAAGCCGTAGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTAAT 652228 Query 552261 TCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 |||| | || | || || | ||| || | | ||| | || || | || | ||| Sbjct 652229 GGGGGAC-ACCTCA-GAGAATGTCCAAGATTTACTGCTTCTGGACGTGGCACCCTTGTCT 652286 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 || || | || |||| ||| ||| ||||||| |||||| | | || || || || Sbjct 652287 CTGGGCATTGAGACAGCTGGTGGTGTTATGACACCCCTTATCAAACGGAACACCACCATC 652346 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 || ||| | ||| || || || || || || || || | | || || Sbjct 652347 CCCACCAAACAGACTCAAGTGTTCAGCACCTACTCTGACAACCAGCCCGGGGTCCTGATC 652406 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 || | | |||||||| ||| | || || || || |||| ||||| | ||| | Sbjct 652407 CAGGTCTACGAAGGAGAGAGAGCCATGACCAAGGACAACAATCTCCTTGGAAAGTTTGAG 652466 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATC 552560 | |||| | || |||||||| | || || || || || || || || || || || Sbjct 652467 CTCACAGGTCTCCCGCCTGCTCCCAGAGGTGTGCCACAGATAGAGGTCACCTTTGACATA 652526 Query 552561 GATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| || | || ||| |||| Sbjct 652527 GATGCCAATGGTATCCTAAACGTGTCTGC 652555 >seq1004 Length=291928 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || ||||| || || | |||||| || |||||||| || || |||| Sbjct 43401 ATGCTGTCATCACAGTCCCAGCTTACTTCAGTGACTCTCAGCGTCAAGCCACCAAGGATG 43342 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| || |||| || ||||| ||||| || ||||||||||| || |||||||| Sbjct 43341 CAGGAACCATCTCTGGTCTCAATGTGCTTCGAATCATCAATGAACCCACAGCTGCTGCCA 43282 Query 550518 TTGCATATGGACTTGATAAA 550537 ||||||||||| | || ||| Sbjct 43281 TTGCATATGGATTGGACAAA 43262 >seq489 Length=653289 Score = 100 bits (110), Expect = 2e-15 Identities = 187/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 ||||| || || ||| || || || || | || |||||||| ||||| || || Sbjct 618950 ATGTCTAAAAACACAGCCATCGGCATCGACCTGGGCACCACATACTCCTGTGTGGGGGTG 618891 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||| ||||| ||||||||||| || || ||||| || || || Sbjct 618890 TTCCAGCATGGAAAAGTAGAAATCATTGCCAATGACCAGGGCAACAGGACCACCCCCAGC 618831 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACT 550156 ||||| | ||||| || ||||| | | || || || || || | || | || Sbjct 618830 TATGTGGCCTTCACTGACACTGAGAGGCTGATCGGGGACGCGGCCAAGAACCAGGTGGCT 618771 Query 550157 GGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 || || | ||| || | ||||| || || | | |||||||||| ||| ||||| Sbjct 618770 CTGAACCCAAGCAACACAGTGTTTGACGCCAAGAGGCTGATTGGAAGAAAGTTTGATGAT 618711 Query 550217 TCGACTGTTCAGGCAGATATGAAGCATTGGCCTTT 550251 || ||| ||||| ||||||||||| ||||| || Sbjct 618710 GCGGTTGTCCAGGCTGATATGAAGCACTGGCCCTT 618676 >seq5 Length=3291551 Score = 98.7 bits (108), Expect = 8e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | |||||||| || || || |||||||| || || || ||||| Sbjct 169817 GTTACAAATGCTGTGGTGACTGTACCCGCCTACTTCAATGACTCCCAGCGCCAGGCTACC 169758 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| || |||| || ||||| || || ||||| ||||| || || ||| Sbjct 169757 AAAGATGCTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCT 169698 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 169697 GCTGCCATCGCTTATGGCCTCGACAAA 169671 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 ||||| |||||||| | || |||||||| || | || || | ||| || | Sbjct 168248 TTTGAGGGAGAAAGGGCCATGACCAAAGATAACAACCTGCTGGGGAAATTTGATCTGACT 168189 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || ||||| || ||||| ||||| || || |||||||| || |||||||| |||||| Sbjct 168188 GGAATACCTCCAGCACCTCGAGGAGTTCCTCAGATTGAAGTAACATTCGATATTGATGCC 168129 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 ||||| || ||||||| |||| Sbjct 168128 AATGGCATCATGAATGTCTCTGC 168106 Score = 86.0 bits (94), Expect = 5e-11 Identities = 218/328 (66%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || || || || |||||||| || | || || || | ||||| ||| |||||| | Sbjct 168955 ACGGCCTGTGAGAGAGCCAAGCGTACCCTGTCCTCCAGCACTCAGGCCAGCATTGAAATT 168896 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || ||| |||||| || |||| | | ||| | || | ||||| ||||| || Sbjct 168895 GACTCCCTATATGAGGGCATCGATTTTTACACGTCCATCACCAGGGCTCGCTTTGAGGAG 168836 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 || | || || |||||| ||| | || || |||||| | | | | ||||| | Sbjct 168835 CTTAACGCAGACCTGTTTAGAGGAACGCTGGAGCCTGTAGAAAAGGCTCTCCGAGATGCC 168776 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||||| || || | | || || || || || || || || || || || | ||||| Sbjct 168775 AAGATGGACAAGGCTCAGGTCCACGACATCGTCCTGGTGGGAGGGTCAACTCGTATTCCA 168716 Query 552153 AAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 || || | ||| | | || ||| ||| ||||| || || |||| | || ||| Sbjct 168715 AAGATCCA-GAAGCTTCTGCAGGACTTCTTT-AATGGGAAGGAACTAAACAAGAGCATTA 168658 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | || |||||||| || ||||||||||| Sbjct 168657 ACCCTGATGAGGCAGTGGCCTATGGTGC 168630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028806342321910