Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1203 132 4e-26 seq155 132 4e-26 seq441 104 2e-17 >seq1203 Length=218618 Score = 132 bits (146), Expect = 4e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||||| || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 640 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 581 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 580 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 521 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30321 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 520 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 468 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || || |||||||| ||||| || | |||||||||||||| || || ||||| || ||| Sbjct 2105 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 2046 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 ||||| |||| | |||||| |||||||| || |||||||| || | || || ||||| Sbjct 2045 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1986 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || | || |||||| || || |||||||| || Sbjct 1985 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1954 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| || |||| |||||| |||| || |||||||| ||| | ||| || Sbjct 1857 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 1798 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 1797 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 1753 >seq155 Length=1349651 Score = 132 bits (146), Expect = 4e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||||| || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 1337507 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 1337448 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 1337447 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 1337388 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30321 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 1337387 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 1337335 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || || |||||||| ||||| || | |||||||||||||| || || ||||| || ||| Sbjct 1338972 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 1338913 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 ||||| |||| | |||||| |||||||| || |||||||| || | || || ||||| Sbjct 1338912 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1338853 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || | || |||||| || || |||||||| || Sbjct 1338852 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1338821 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| || |||| |||||| |||| || |||||||| ||| | ||| || Sbjct 1338724 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 1338665 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 1338664 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 1338620 >seq441 Length=723953 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 |||||||||||| |||| ||| |||| ||| |||| ||||| ||||| || ||||| || Sbjct 619371 CTCCCTGCTGAGAACTATGTTGATCCGGTCCTTCAGGGGTCTGTTCTTCTCCGGGATTGA 619312 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGC 112203 |||||| ||||| || ||||| |||||||| |||||| Sbjct 619311 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTGC 619275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571489930007