Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq656 318 1e-81 seq197 107 4e-18 seq258 100 5e-16 seq761 96.9 6e-15 >seq656 Length=490082 Score = 318 bits (352), Expect = 1e-81 Identities = 858/1289 (67%), Gaps = 40/1289 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| |||||| ||||| | | | ||| | |||| | || || ||||| Sbjct 300420 CCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCA-GCTGGCCTCCAGGGC 300362 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483 |||| |||||||||||| ||||| ||||||| | ||| || || || || Sbjct 300361 GGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAG-CAGTTGAGCTTCTGGGCTTTCGA 300303 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 | || ||||| || ||| |||| |||| ||||| |||||||| |||||||||| Sbjct 300302 ACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCC 300243 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 ||| | ||||||| | ||||| || ||||| || |||||| || || | | Sbjct 300242 GGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCT 300183 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||| |||||| ||| || || ||| || |||||||| | ||| Sbjct 300182 TGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCGAA----- 300128 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 | || | | | |||| | ||| ||| ||||| | | ||||||||||| Sbjct 300127 AGTCCGCTCAGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTAC 300078 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 | || ||||||||||||||| |||| |||| | |||||| || |||||||||||||||| Sbjct 300077 AGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACT 300018 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| ||||||| | || || ||| | ||| ||||||||||| ||||| Sbjct 300017 TGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGT 299958 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTC 221902 |||| || || ||| ||||| | | | || || ||| | | ||| || || Sbjct 299957 AGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTG-CTGAGCCTTC 299899 Query 221903 ACCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||| | |||| ||||||| | ||||||||| || |||||| | ||||||| Sbjct 299898 ACCACCTTCTT-----CACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACT 299844 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | ||||||||| || |||||| | |||||||||||| ||||| || Sbjct 299843 CCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCT 299784 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| | || |||| |||||| ||||| |||||||||| || | || || |||| Sbjct 299783 GGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTC 299724 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 299723 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAA 299664 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||||||||||| || | ||| | || || |||||||||||||||||||| | || Sbjct 299663 AGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGT-CA 299605 Query 222201 CCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259 ||| | | | |||| | | || || |||| ||||| || ||||| ||| Sbjct 299604 ACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCG 299545 Query 222260 TTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACC 222318 || ||||| ||||| | | | | | | || | | || | | || |||||| || Sbjct 299544 TTAGTGCCAGCGATGTAGCTCCCAGTC-GATCTGATGCAGCTCACCGCCACGCCGATCCC 299486 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 || ||| ||| || || | |||||| ||| || ||||| ||||||||| || Sbjct 299485 GCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCT 299426 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| ||||| | | ||||| || || |||| ||| | | ||| | |||||| Sbjct 299425 GTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTT 299366 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || || || |||||| || || | | |||| ||| | ||| ||||| | Sbjct 299365 GAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAAT 299306 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACATGTACTG-G 222556 | | | | |||| | ||||| || | | | | | |||||| ||||| ||| | Sbjct 299305 GGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACAC-CCTCATGAGCATGTGCTGCG 299247 Query 222557 GGC-CTC-TCCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 ||| ||| |||| ||| | || || ||||| || || ||||| || |||| Sbjct 299246 GGCGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGATAGGAGCGCTCCAGGGTTTTGA 299190 Query 222615 ACCCAAAGTAGTTGAGGTCAAAGTCTCTG 222643 | |||||| ||||| | ||| |||||| Sbjct 299189 AGCCAAAGAAGTTGTAGGAAAAATCTCTG 299161 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||| ||| ||| |||||| | ||| || || | Sbjct 300712 CATCTCCTCGTTCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGAT 300653 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| ||||| ||||| | ||| | ||| ||| | | |||||| Sbjct 300652 CTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 300593 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||||||||||||||||||||| ||| ||| ||||||||||| |||| |||||| || Sbjct 300592 CTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCT 300533 Query 221245 GTT 221247 ||| Sbjct 300532 GTT 300530 >seq197 Length=1194064 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| ||||| || ||||| ||||| ||||| ||||| ||| || || ||||| Sbjct 1112577 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 1112636 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| |||||| ||| ||| || ||||||||| || ||| ||||| || ||| Sbjct 1112637 GCCATCTACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTACCTTCTCCAATGAACTC 1112696 Query 25993 ATCAGCAGGGACGA 26006 ||||||||||| || Sbjct 1112697 ATCAGCAGGGATGA 1112710 >seq258 Length=1028905 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || || || |||||||| ||||| ||| || || ||||| Sbjct 692500 GGAGAGCGTGTGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 692559 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | | | || | |||||||| ||| ||| ||||||||| Sbjct 692560 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCT 692618 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 692619 CATCAGCAGAGACGAGG 692635 Score = 96.9 bits (106), Expect = 6e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || || || |||||||| ||||| ||| || || ||||| Sbjct 706731 GGAGAGCGTGTGGTGGCGTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 706672 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | | | || | ||||| || ||| ||| ||||||||| Sbjct 706671 GCCATCTTCTGGCTGAAGAA-ACGCGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCT 706613 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 706612 CATCAGCAGAGACGAGG 706596 >seq761 Length=414005 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| |||||||| || ||||||| || || | ||||||| || |||||| || Sbjct 275658 CATAAAGAGGTCTGGAATCCACAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCTTCTTT 275717 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||| ||| |||| |||||||||||||| | |||||||||||| |||||||| || Sbjct 275718 ACCAGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCAGGGCTCCAGGTA 275777 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || || |||| || Sbjct 275778 CACCGCAAAGGCCCCTGGTCTCT 275800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928737297824960