Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq186 203 2e-46 seq489 95.1 8e-14 seq1004 91.5 1e-12 seq5 91.5 1e-12 >seq186 Length=1290931 Score = 203 bits (224), Expect = 2e-46 Identities = 384/555 (69%), Gaps = 10/555 (2%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | |||| || ||| Sbjct 651097 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATG 651156 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| |||||||| || ||||| || || ||||| || |||||| | | Sbjct 651157 GAAAAGTGGAAATCATTGCCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCT 651216 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || ||||||||||||||||| | |||| ||| || || Sbjct 651217 TTACTGACACAGAGAGACTCATTGGAGATGCTGCTAAGAACCAAGTTGCCATGAACCCCA 651276 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTC 474562 || ||| | |||||||| ||| | | ||||| | | |||||||| ||| | || Sbjct 651277 CAAACACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGA-CCCAGTGGTT 651335 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATA 474620 ||| ||| ||| | ||||| || |||||| | |||| ||| || || | | Sbjct 651336 CAAAGTGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTC 651395 Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATG 474679 || | |||| | | || ||||| ||| | ||| | || || | |||||||||||| Sbjct 651396 CAGGTGGAATATAAG--GGAGAAAC-AAAGACTTTCTGTCCTGAGGAGATTTCTTCAATG 651452 Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 || | | ||||||| | ||| || ||| | | | | ||||| ||| | |||| Sbjct 651453 GTCCTGGTTAAAATGAGAGAAATAGCTGAG-GCCTTTTTGGGACAGAGGGTATCGAATGC 651511 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || |||||||| || ||||| ||||| || | ||||| || || ||||| || Sbjct 651512 GGTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGG 651571 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||| | || || |||||| | ||||| || ||||| || |||||||| || |||| Sbjct 651572 AGTAATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGC 651631 Query 474859 TTATGGTCTTGATAA 474873 ||||| || ||||| Sbjct 651632 CTATGGCCTGGATAA 651646 Score = 152 bits (168), Expect = 3e-31 Identities = 545/840 (65%), Gaps = 14/840 (2%) Strand=Plus/Plus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| | || |||| ||| ||||| || || |||| || ||||| || || Sbjct 651723 GAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGGGACACACACCTCGGTGGGGAGGAC 651782 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 ||||| || ||| | || | || |||| || || ||||| || ||| | || || Sbjct 651783 TTTGACAACAGAATGGTCAACCACTTTGTG--GAGGAATTCAAAAGAAAACACAAGAAGG 651840 Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515 ||| || || | | |||| | || | || | || || ||||| | || || Sbjct 651841 ATATCAGCCAGAATAAG--AGAGCAGTGAGGAGACTCCGCACGGCCTGTGAGAGAGCAAA 651898 Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575 | || | | || || || || ||| |||| |||| || || ||||| || || Sbjct 651899 GAGAACATTGTCCTCCAGCACCCAGGCTAGCATTGAGATTGACTCACTGTTTGAGGGGAT 651958 Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635 ||| | | | || || |||||||| ||||| || | ||||| ||||| || Sbjct 651959 TGACTTTTACACATCAATCACAAGGGCACGCTTTGAGGAACTAAACTCTGACCTCTTCAG 652018 Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAAG 475694 |||| | || || |||||| |||| | | | ||| ||||||| || ||||| |||| Sbjct 652019 GGGAACACTGGAGCCTGTTGAA-AAGTCCCTACAAGATGCTAAACTGGATAAATC-CAAG 652076 Query 475695 -TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 | ||||||||||| | || || ||||| |||||||| || ||||| |||| | | Sbjct 652077 ATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAATCCCCAAAAT-CCAGAAGCTCCT 652135 Query 475754 TCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || || | || ||||||| | | | || | ||| | || ||||||||||| || || Sbjct 652136 ACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTATCAACCCTGATGAAGCCGTAGC 652195 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAA 475872 || || || || ||||| || ||||| || || | | ||||| | | | Sbjct 652196 CTACGGTGCAGCAGTCCAGGCTGCTATCCTAATGGGGGACACCTCAGAGAATGTCCAAGA 652255 Query 475873 TATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTAT 475932 | | | ||| | ||||| | || | || | || |||| |||| ||| || |||| Sbjct 652256 TTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCATTGAGACAGCTGGTGGTGTTAT 652315 Query 475933 GACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCAC 475992 ||| ||||| | | || || | ||||| |||| | | |||| || ||| Sbjct 652316 GACACCCCTTATCAAACGGAACACCACCATCCCCACCAAACAGACTCAAGTGTTCAGCAC 652375 Query 475993 TTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCAC 476052 || ||||| || || | || ||||| ||| ||||| || ||| | || Sbjct 652376 CTACTCTGACAACCAGCCCGGGGTCCTGATCCAGGTCTACGAAGGAGAGAGAGCCATGAC 652435 Query 476053 TAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGG 476112 || || || || ||||||| ||| | || |||| | || |||||||||||||| Sbjct 652436 CAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGGTCTCCCGCCTGCTCCCAGAGG 652495 Query 476113 AGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || || || || || || || ||||| || ||||| |||||||| || || || |||| Sbjct 652496 TGTGCCACAGATAGAGGTCACCTTTGACATAGATGCCAATGGTATCCTAAACGTGTCTGC 652555 >seq489 Length=653289 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||||||||| |||||||||||||| || || || || || || ||||| Sbjct 618883 ATGGAAAAGTAGAAATCATTGCCAATGACCAGGGCAACAGGACCACCCCCAGCTATGTGG 618824 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AAT 474499 | || ||||| ||||| || || || || || || || | | || || ||| || Sbjct 618823 CCTTCACTGACACTGAGAGGCTGATCGGGGACGCGGC-CAAGAACCAGGTGGCTCTGAAC 618765 Query 474500 CCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT 474559 || || || | ||||| || || || ||||||| | || ||||||||| | | Sbjct 618764 CCAAGCAACACAGTGTTTGACGCCAAGAGGCTGATTGGAAGAAAGTTTGATGATGCGGTT 618705 Query 474560 GTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTG 474595 ||||| |||||||| || ||||| ||||||||| Sbjct 618704 GTCCAGGCTGATATGAAGCACTGGCCCTTTAAGGTG 618669 >seq1004 Length=291928 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-G 476090 |||||| |||||| | || ||||||||||| | | |||| ||| | |||| | Sbjct 41211 TGAAGGAGAAAGAGCCATGACCAAAGATAATAATATCTTAGGAAAATTTGAA-TTGACCG 41153 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 | ||||| ||||| || ||||||||||| || || || || || ||||| || ||||| | Sbjct 41152 GCATTCCACCTGCCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGATGCTA 41093 Query 476151 ATGGTATTCTTAATGTTACTGC 476172 |||| ||||||||||| |||| Sbjct 41092 ATGGCATTCTTAATGTGTCTGC 41071 >seq5 Length=3291551 Score = 91.5 bits (100), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || ||||| | || || || ||| ||||||| || | || ||||||| Sbjct 170990 GCAGTAGGAATTGACCTGGGCACCACCTACTCCTGTGTAGGAGTGTTTCAGCATGGTAAG 170931 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| ||||| | |||||| Sbjct 170930 GTCGAAATCATTGCCAATGACCAGGGGAACAGGACCACACCCAGTTATGTAGCCTTTACT 170871 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || || || |||||||||||||| ||| |||| Sbjct 170870 GACACAGAGAGGCTAATTGGAGATGCTGCCAAAAATCA 170833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267782036565332