Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq183 163 3e-35 >seq183 Length=1254102 Score = 163 bits (180), Expect = 3e-35 Identities = 582/886 (66%), Gaps = 24/886 (3%) Strand=Plus/Minus Query 160084 CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGT 160143 ||||||| ||| ||| || |||||||| || || || || | ||| |||| ||| Sbjct 18724 CGTCAACTTCTGGGTCAAACTTATTTGCAAAGAGGTGCTG--CTGTCTC-AGGAGCCACA 18668 Query 160144 GCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGT 160203 | | |||||| | || |||| ||||| || | |||| | || |||| || || Sbjct 18667 GGAGGTCTCCAGCTCCATACACACAGACAGATCTCCTGTGGGCCCCTGTGCATGGGTAGT 18608 Query 160204 ACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCG 160263 | |||||||||| |||||| ||||| ||| |||||| || ||||| | | Sbjct 18607 AGGGAGCTCCTTTGCTCACGTCTCCTTCTAGGTAAGACCACTTGACTGCCCTGGAGAGAG 18548 Query 160264 CCTGCATGTCGGAGGTGTCGTATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGC 160322 |||||||||| || |||||||||| ||| || ||| | | || ||||| |||| Sbjct 18547 CCTGCATGTCCGACACGTCGTATTTG-CCATTAGCGGGGGCTGATCCAGGAACATGGGGC 18489 Query 160323 ATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCC 160382 || | ||| ||||| ||||||| || || || ||||||||||| ||||| ||| || Sbjct 18488 ATCCTCTGCAGGGTAGCCCACATATGCTCATCCGGGCTGTACGTATCCTTCTCCCACTCT 18429 Query 160383 ATGAA-CTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGAC 160441 ||||| ||| | | |||| | ||| | ||| | || ||| || | || | Sbjct 18428 ATGAAGTTCTGC-ACCTCTCTGTTCTGCATTATGTGTTTCACAAAGGCCCTTGAGACAAT 18370 Query 160442 AAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGAC 160500 |||||| ||| | || ||||| || || | || || || | | |||| || | | Sbjct 18369 AAAGTAGGCGTTTCCTGAGAACATGGGGCTCCTGATCGGTGGTGGGCTCTTCCTCACGCC 18310 Query 160501 CGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACC-ATCTTG 160559 || | |||| || || | ||| | | || ||| | |||| ||||| Sbjct 18309 CGTCCT--GACA--ACCGTGTTGGTGACATTGTGGTGGTACTGCCAGC-GACCTTTCTTG 18255 Query 160560 T--GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCT 160617 | || ||| || ||| || || | ||||| || | ||| | |||||| ||| Sbjct 18254 TAGTCGTTGG--TGGCTTCGGTTTCCATGCTGTTTCTCCCATTGAGGGCTTTCAG-AGCT 18198 Query 160618 -TGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTAC 160676 | || ||||| ||| || |||| ||||| || || || || ||| | || |||| Sbjct 18197 CTCACCATCTCCCTGTTGGTTTTGATTGGAAAATCTGTCCCACAAGTGTTCAGCAGGTAC 18138 Query 160677 TTCCATTTCGCGCTCAGGTCGT-GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCG 160735 ||||| | | || | ||| | || || |||||||||| | ||||||||| || | Sbjct 18137 TTCCA-CTGGATATCGGAGCGTAGGAGATCTTTCATGCAATTCAGATCTGCCTGTACTCT 18079 Query 160736 GCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACA 160795 | ||||||||| ||||| || | |||| ||||||| | || || || || || Sbjct 18078 GGACCAGGAAGCATACACAACTCTTTCTAATTTACTGCTTATGAAAACATTGGGAAAGCA 18019 Query 160796 CGACACGATTCCCACCACCGCCAGAAAGAACAT-CTTATCCGCCTTTCGGTCCACGTGCA 160854 || || ||| | ||| ||| ||| || | | | || | || || || | Sbjct 18018 GGAAACTATTTCTCTCACAGCC-CTGTGAAAATCCAGAGAAGATTTCTGATCAACATGAA 17960 Query 160855 CGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCT 160914 | || || ||||||||||| || ||||| | || || | || || |||||||| |||| Sbjct 17959 CACAGTAGAGGTTCTGAGGAGCATAGATAGACCGCAGGAGTCTTTCAAACATCTCAATCT 17900 Query 160915 TATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | | ||||||||| || ||||| || || ||||| | | |||||| Sbjct 17899 TTTCATGGATCACCATGGAGTACGCAATAGGAAAATTTGCCTCCTC 17854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577152394092840