Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq656 188 9e-43 seq197 84.2 3e-11 >seq656 Length=490082 Score = 188 bits (208), Expect = 9e-43 Identities = 960/1504 (64%), Gaps = 66/1504 (4%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||| |||| | |||| |||||||| |||||||||| | | Sbjct 299245 CCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGACATTGACGCCGC 299304 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||| || | |||| | | || ||||| ||||| | |||||||||| Sbjct 299305 CATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCAACCCTCT 299363 Query 75330 TCAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||| || || || ||| | ||||| ||||||| |||||||| |||||| ||||| Sbjct 299364 TCAACGCCGGGAC--CAACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 299421 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||| ||| | || ||||| | || || | | |||| || | || || || | || Sbjct 299422 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 299481 Query 75448 TGGGGGTATTGGGATGC-----ACATCCAT--GATG---TGAGAGCCAATAAATCTCGTA 75497 ||| || || || || | | ||| ||| || |||| || ||| | Sbjct 299482 TGGCGGGATCGGCGTGGCGGTGAGCTGCATCAGATCGACTGGGAGC---TACATCGCT-- 299536 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || |||| | | || ||||| || || | ||| || Sbjct 299537 -----GGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAACA 299591 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTC--GCAA--GGGGTCCATCGCGGTCTACTTG 75613 | || |||||||| | || | | ||| | || | ||| || |||| | ||| || Sbjct 299592 CCGCCCGCTATGTTGACCAGG-GTGGCAACAAGCGACCGGGAGCCTTCGCCATGTACCTG 299650 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGA 75672 || || ||||| ||| | | || ||||| ||| | | || ||| ||| | || Sbjct 299651 GAGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAG-AACACAGGAAAGGA 299709 Query 75673 AGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 ||| | ||||| || || | || ||||||| || ||||| ||||||||| | Sbjct 299710 GGAGCAGAGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAG 299769 Query 75733 GGTTGAGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790 || ||| | || | ||||| || | ||||| || || || || || | Sbjct 299770 AGTGGAGAGCAACCAGGAC--TGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGAC 299827 Query 75791 GAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC 75849 || || | ||| ||||||||||| |||||||| || |||||| |||| || || | Sbjct 299828 GAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGT 299886 Query 75850 CAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || | || || | | | | |||||| | || || || | || |||||||| | Sbjct 299887 GAAGAAGGTGGTGA-AGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAA 299945 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || || || || |||||||||||||| || || |||| |||||| ||||| |||| Sbjct 299946 CCGGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACC 300005 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 |||| || |||||| || || || |||||||| || | |||||||| ||||| | Sbjct 300006 TGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACG 300065 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTC 76088 || ||| || || || |||| || |||||||| | ||| |||| ||| | Sbjct 300066 AGGTGGCGGTCTGTAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCTGAG---C 300122 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 | ||||| || | | | || || |||| ||| | | || || || ||| Sbjct 300123 GGACTTTCGACTTTAAGAAGCTGGCCTCGGTCACCAAGGTGATCGTGAAGAACCTGAACA 300182 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGC-GA-AAGTCTAATATGCGACA 76206 ||||||| | || | || ||||| | | || || | ||| || | || || Sbjct 300183 AGATCATTGAGATCAACTACTACCCCGT--ACCCGAAGCAGAGAGGTCCAACAAACGCCA 300240 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 | | || || || | || || || ||| | || || | || || || || ||| | Sbjct 300241 CCGGCCCATCGGGATCGGAGTCCAGGGTTTGGCAGACGCCTTCATCCTGATGCGTTACCC 300300 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAA-TGCT-------CGTATCTTTGAAACCATG 76318 || || ||||| || || | || |||| | ||||| || ||||| Sbjct 300301 GTTCGA--------AAGCCCAGAAGCTCAACTGCTCAACATCCACATCTTCGAGACCATC 300352 Query 76319 TATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378 || |||| |||||||||| || || ||| |||| | || | ||| | || ||||| Sbjct 300353 TACTACGCCGCCCTGGAGGCCAGCTGCGAACTGGCGGCAGAGCTGGGTCCTTACGAGACG 300412 Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC 76438 | || || || || | | |||| | || |||| || ||||||| || || || Sbjct 300413 TACGAAGGCTCACCTGTCAGCAAAGGCATCCTCCAGTACGACATGTGGG-AGAAGACTCC 300471 Query 76439 AAGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 | | || | |||||| | | || ||||| ||| | | || | | || Sbjct 300472 CACCGACATGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAA 300531 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 ||| || || |||| || ||||| || ||||||||||| || ||| |||| || || || Sbjct 300532 CAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTGGGCAACAACGA 300591 Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617 | | | || | ||||| | ||||||||| | || |||| | || ||||| Sbjct 300592 GTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTCCA 300651 Query 76618 CATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT 76677 || ||||| ||||| |||| ||||| | | || || || ||| | |||| || Sbjct 300652 GATCGTCAATCCTCACCTTCTCAAGGACCTGACGGAGCGGGGGCTGTGGAACGAGGAGAT 300711 Query 76678 GAAG 76681 |||| Sbjct 300712 GAAG 300715 >seq197 Length=1194064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| || | || ||||| ||| ||||| ||||||||||| || ||||| ||| || Sbjct 1112580 GAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATT-TGCTGC 1112638 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 || || ||| | |||||| | || |||||||| ||||| |||||| |||||||| || Sbjct 1112639 CATCTACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTACCTTCTCCAATGAACTCAT 1112698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596500554525920