Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq608 170 2e-36 seq362 158 1e-32 seq1535 134 2e-25 seq656 127 2e-23 seq258 102 1e-15 seq194 87.8 2e-11 seq12 86.0 8e-11 >seq608 Length=533172 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 50267 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 50208 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| | ||||||| |||| | Sbjct 50207 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCGGAGGCGATGCGCTCGAAGA 50148 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 50147 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 50088 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 50087 GCACCTGCTTCAGCACCTTGTA 50066 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 44619 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 44560 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || | ||||| | ||||||| | || ||| |||| | Sbjct 44559 TGGTGGAGCGCTTGTTGTAGGGAGCCAGGCCTGAAGCCTCGGAGGCGTTGCCCTCGAAGA 44500 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||| ||||||| ||| | ||| |||||||| |||||||| Sbjct 44499 TGTCGTTGACGAACGAATTCATGATGCTCATGGCCTTAGAAGAGATGCCGGTGTCGGGGT 44440 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 44439 GGACCTGCTTCAGCACCTTGTA 44418 >seq362 Length=835642 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| | | | || Sbjct 582259 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGA 582318 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| | ||||||| || | | Sbjct 582319 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCAAAGA 582378 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| || | Sbjct 582379 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGAT 582438 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 582439 GGACCTGCTTCAGCACCTTGTA 582460 >seq1535 Length=133350 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 124048 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 123989 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||||||| ||||| | | ||||||| || | | Sbjct 123988 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAAGCCTCTGAGGCGATGCGCTCAAAGA 123929 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||| || |||||||||| ||| | |||| |||||||| ||| || | Sbjct 123928 TGTCACTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCAGGAT 123869 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 123868 GGACCTGCTTCAGCACCTTGTA 123847 >seq656 Length=490082 Score = 127 bits (140), Expect = 2e-23 Identities = 211/304 (69%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || ||||| || |||| ||| | || || ||||| || || || || ||||| Sbjct 299611 CTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGA 299552 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180 | |||||| ||||| || | |||| || | | | ||| || | | || | Sbjct 299551 GTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCT----CACCGCCA 299496 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 |||||| ||||| || || ||||| ||||| |||||||| || || ||||||||||||| Sbjct 299495 CGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGC 299436 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 ||||||| ||| |||||||| | | || ||||| || |||| | | Sbjct 299435 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGG 299376 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGT 1630360 | |||||||||||||| || |||| || ||||||| ||| | ||||| || || Sbjct 299375 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 299316 Query 1630361 AGGT 1630364 |||| Sbjct 299315 AGGT 299312 Score = 122 bits (134), Expect = 1e-21 Identities = 282/434 (65%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| ||||| |||||| || | | || |||||||||||||||||| | || Sbjct 300045 ACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 299986 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||||||| ||||| || |||| | | ||| | Sbjct 299985 CTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATG 299926 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNN 1628346 ||||| |||| | ||| | || ||| || || | | | || | Sbjct 299925 ATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATAT 299866 Query 1628347 NNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGAC 1628406 ||||| || | || ||||||||| ||| ||||| |||| Sbjct 299865 TTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTG 299806 Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 ||||| | || |||||||| | || || | | ||| || |||||| || Sbjct 299805 GGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATC 299746 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 |||| ||||| || ||||| | || | | ||||||||| || |||||| || || Sbjct 299745 CACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGC 299686 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || || |||||| | || |||||||||||||||||| ||| ||||| ||| Sbjct 299685 TCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGT 299626 Query 1628587 CGCTTGCCGCCGCC 1628600 |||||| ||| || Sbjct 299625 CGCTTGTTGCCACC 299612 Score = 111 bits (122), Expect = 2e-18 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || ||| || ||||| ||||| ||||| | ||||| | || || | Sbjct 300701 TCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTC 300642 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | ||||| | |||| |||||| Sbjct 300641 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGC 300582 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | ||||||||||||| | |||| || || ||| | || || Sbjct 300581 CCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGC 300522 Query 1627475 CGTG 1627478 |||| Sbjct 300521 CGTG 300518 >seq258 Length=1028905 Score = 102 bits (112), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||||| |||| ||||||||||| |||||||| ||||| Sbjct 692633 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTC 692574 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||||||||| || ||| ||||| ||||| ||||| |||||||| || Sbjct 692573 AGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAA 692518 >seq194 Length=1208771 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 989265 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTTTGTGACAC 989324 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| |||||| || || ||||| |||| || |||||| ||||||| Sbjct 989325 CATGACCTGCCGTGGCCACCTGATGGCCATCACTCGTCACGGCATCAACCG 989375 >seq12 Length=2849033 Score = 86.0 bits (94), Expect = 8e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169 |||||||| || ||||||| | || || | || | | | ||||||||||||| || Sbjct 887444 CGCCACGGACAGAAGGGCATCCTGAGCCGTCTGTGGCCGGCGGAGGACATGCCCT--TCA 887387 Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 ||| | | |||| || || |||||| || |||||||||||| | |||| || |||||| Sbjct 887386 CCGAGAG-CGGCATGACCCCGGACATCCTGTTCAACCCGCACGGCTTCCCCTCCCGCATG 887328 Query 733230 ACCATGGGCAAGATGCTCGAG 733250 ||||| || | | || ||||| Sbjct 887327 ACCATCGGGATGCTGATCGAG 887307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106379363100103