Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq656 190 2e-43 seq351 98.7 9e-16 >seq656 Length=490082 Score = 190 bits (210), Expect = 2e-43 Identities = 943/1478 (64%), Gaps = 65/1478 (4%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | ||| | || |||||||| ||||| |||||||| |||| Sbjct 300622 GTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGA 300563 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 || || |||||| |||| || || |||| | ||||| ||| || Sbjct 300562 GGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTC 300503 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAA 138719 ||| ||| | ||||||||||| ||| | || | || | |||||| |||||||| | Sbjct 300502 CTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAG 300443 Query 138720 CATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 || || || | || ||||||||||| ||||| ||| | |||| ||||| Sbjct 300442 GATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAG 300383 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 ||| ||| ||||| || || | ||||| || || ||| || || ||||||| Sbjct 300382 TTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAG 300323 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 | | || || | ||| ||| |||| || | || |||| ||||| |||| || || Sbjct 300322 TTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTG 300263 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGG 138956 || || | |||| || || ||||| || ||| || | | |||||| | || Sbjct 300262 GACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGAC-CTCT--CTGCTTCGGGTACGGG 300206 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 || ||||| | || ||||| ||||| | || ||||| |||||| || | | || Sbjct 300205 GTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGC 300146 Query 139015 TTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 || | ||| ||| | || || | | ||| ||||| ||| ||||| Sbjct 300145 CAGCTTC--TTAAAGTCGAAAGT--CCGCTCAGGCGT----GACGT--ACA----TGTTG 300100 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATT 139134 | || ||||| | ||| || |||||||| ||||| | | |||| || || || Sbjct 300099 AGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATC 300040 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | || | || || |||||||| || || | || || || ||||| || | ||| Sbjct 300039 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTG 299980 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAAT 139254 || || || ||||||||||| || || || || |||||| || | ||| || ||| Sbjct 299979 CAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCG 299920 Query 139255 TTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCT--CGTACTTTT 139312 | | ||| ||| ||| || || ||| ||| || | || | | ||||| Sbjct 299919 T--ACCAA--ACCT-GCTGAGCCTTCAC-CAC-----CTTCTTCACCCTCCCTTCCTTTT 299871 Query 139313 C---------GTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGAC 139360 | |||||| | || || || | | || | | |||| || || ||| Sbjct 299870 CATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGAC 299814 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| || |||||||| || ||||| | ||| || || | | |||||||||| | Sbjct 299813 ACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGT 299754 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | || ||||||| ||| | | | || | || ||| || ||| || |||| Sbjct 299753 CAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 299694 Query 139481 GTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 |||| | ||||| || || || ||| |||||| || ||||| || ||||| | | Sbjct 299693 TCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGG 299634 Query 139541 CGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 | || | | |||||||| || || || | || | | || ||| | || |||| Sbjct 299633 CTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCA 299574 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGA 139653 |||||| |||| || | | | ||||| |||| | |||| || || ||| Sbjct 299573 GCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGT--CGA 299516 Query 139654 GCTCGGACGTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 || || | || | || | |||||| ||||| | ||||||| || | |||| Sbjct 299515 --TCTGATG-CAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCA 299459 Query 139713 ATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | || | | || ||||| || || |||||||| |||| ||| | || ||| |||| Sbjct 299458 CT-GCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGC 299400 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | || || |||| | || || ||||| || || || || ||||| |||| Sbjct 299399 AGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGA 299340 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGA 139891 || | | ||||| || | ||| || || |||||| |||| || ||||||||| Sbjct 299339 ACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGA 299280 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 ||||||| || || | ||| ||||| || || || |||||||| || | ||| | Sbjct 299279 TACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCT 299220 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAG 139989 | |||||| | ||| ||||| ||| |||||||| Sbjct 299219 TCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAG 299182 >seq351 Length=862037 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || |||||||| || || || || || || || | | | Sbjct 703720 ATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAGCCAAGC 703779 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 703780 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 703839 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 703840 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 703899 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 703900 ATCCAGAAGGAGTCCACCCTCCACCTGGT 703928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 686548 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 686607 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || || || || || || || || Sbjct 686608 GACACCATTGAAAATGTGAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 686667 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | ||||||| ||||| || |||||||| ||| Sbjct 686668 CAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGAT 686703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449845529976520