Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq186 275 5e-68 seq1004 86.0 5e-11 >seq186 Length=1290931 Score = 275 bits (304), Expect = 5e-68 Identities = 973/1506 (65%), Gaps = 18/1506 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| || || || || |||| || ||| || | |||| ||| || || Sbjct 652601 ATTGGTAATTGTGATTTTGTTTTCTTTGCCAGTGCTTTTGTCCACTGCAGACACGTTTAG 652542 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||||||||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 652541 GATACCATTGGCATCTATGTCAAAGGTGACCTCTATCTGTGGCACACCTCTGGGAGCAGG 652482 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||| ||| | | ||| |||| || ||| || || || || | || || Sbjct 652481 CGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTGGTCATGGCTCTCTC 652422 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 || ||| | | ||||| || | | || || || || || || | || ||| Sbjct 652421 TCCTTCGTAGACCTGGATCAGGACCCCGGGCTGGTTGTCAGAGTAGGTGCTGAACACTTG 652362 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | ||| || || || ||||| | | |||| ||||||| ||||||||| Sbjct 652361 AGTCTGTTTGGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTCATAACACCACCAGC 652302 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 ||| || | || ||||| | || | || || | || | | || ||| | || || Sbjct 652301 TGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAATCTTGGACATTCTC 652242 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 || | || | || ||||| || || | || ||||| || || || |||||||| Sbjct 652241 TGAGGTGTCCCCCATTAGGATAGCAGCCTGGACTGCTGCACCGTAGGCTACGGCTTCATC 652182 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-A 281858 ||| || | | | | || || | | |||||||||| |||| || || | ||| | Sbjct 652181 AGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGTAGGAGCT-TCTGGA 652123 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 || || || | | || || |||||||| ||||||||||| | || |||||||||| Sbjct 652122 TTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATCTTGGATTTATCCA 652063 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 |||| | ||| || |||||||| || || || | || || | ||| || Sbjct 652062 GTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGTGTTCCCCTGAAGAGGTCAGAGT 652003 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 282036 ||||| || || || || || || ||| | || || ||||| || || |||| Sbjct 652002 TTAGTTCCTCAAAGCGTGCCCTTGT--GATTGATGTGTAAAAGTCAATCCCCTCAAACAG 651945 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 || |||| ||||| ||| || || || || | || | || || | ||||| Sbjct 651944 TGAGTCAATCTCAATGCTAGCCTGGGTGCTGGAGGACAATGTTCTCTTTGCTCTCTCACA 651885 Query 282097 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTTT 282154 || || | ||||| | | ||| | || ||| | | | ||| | || | |||| Sbjct 651884 GGCCGTGCGGAGTCTCCTCACTGCTCT--CTTATTCTGGCTGATATCCTTCTTGTGTTTT 651827 Query 282155 CTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 282214 || ||||| || || ||| | | || | | || ||||| || || || || | Sbjct 651826 CTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCCCCACCGAGG 651767 Query 282215 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTA 282274 | || | |||| || ||| |||| | || | |||||||||| | || | | Sbjct 651766 TGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTCAGGATTGAC 651707 Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT- 282333 || ||| || || ||||| | |||||| || || ||||| ||| |||| || Sbjct 651706 ACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACATTGCGCTCTCC-TCTT--TTA 651650 Query 282334 --TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||| || ||||| |||| || || || || || ||||| || || | || |||| Sbjct 651649 CCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACGCAGAACA 651590 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || | ||| ||| ||||| || |||||||| || || ||||||||||| || Sbjct 651589 TTTAGTCCCGAGATTACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTTAAAGTAA 651530 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGCTTGCTGTTTG 282510 || ||||| || || || |||| | ||| ||| | |||| | | || ||| ||| Sbjct 651529 GCTGGAACTGTGATGACCGCATTCGATACCCTCTGTCCCAAAA-AGGCCTCAGCTATTTC 651471 Query 282511 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATT 282570 | |||||||| | | |||||| ||||| | || ||| | | ||| | ||| Sbjct 651470 TCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTTGTTTCTCC 651411 Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630 | |||| || | | | || || | |||| | || || || ||||| Sbjct 651410 CTTATATTCCACCTGGACTTTGGGCTTCCCATTGTCATTGACCACCTTGAAGGGCCAGAG 651351 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 |||||| || |||||| | |||||| ||| ||| ||||| | ||||| ||||| Sbjct 651350 TTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCCGTTTGGCATC 651291 Query 282691 AAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 282750 ||| | ||| || || || || | ||| |||| | || || ||||||||||| || Sbjct 651290 AAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTCCAATGAGTCT 651231 Query 282751 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 ||||| || ||||| | |||||| |||||||| | || |||||||| || ||||| Sbjct 651230 CTCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTTGATCGTTGGCAAT 651171 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 282870 ||||| ||||| |||| || | || || |||||| | || || || | ||| || Sbjct 651170 GATTTCCACTTTTCCATGCTGGAAAACCCCAACACAAGAGTAGGTGGTGCCCAGATCGAT 651111 Query 282871 ACCAAT 282876 ||||| Sbjct 651110 GCCAAT 651105 >seq1004 Length=291928 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||||||||| ||||| ||||| | ||||| || || || || || || || Sbjct 41071 GCAGACACATTAAGAATGCCATTAGCATCGATGTCAAAGGTCACCTCGATCTGGGGAACT 41130 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | |||||||| || || ||| | |||| |||| | ||||||||||||| Sbjct 41131 CCTCTTGGGGCAGGTGGAATGCCGGTCAATTCAAATTTTCCTAAGATATTATTATCTTTG 41190 Query 281546 GT 281547 || Sbjct 41191 GT 41192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740175822228534