Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq259 100 5e-16 >seq259 Length=1025966 Score = 100 bits (110), Expect = 5e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 58371 TAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGT 58430 |||| |||| | |||||||| | || || ||||| || || ||| | || ||||| | Sbjct 549521 TAGCAGGAGCTCTCTGGTGGTATTTCATCTCCAAAGGCATTGAGTACCTGGACACAGTAT 549462 Query 58431 TTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTA 58490 ||||||| || ||||||||||| || || |||| ||| || ||||| || || || | | Sbjct 549461 TTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCA 549402 Query 58491 CTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | ||||| || | | ||| | || || || ||| | |||||||| ||| Sbjct 549401 CCATGTTCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 549352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903306641446240