Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq656 324 1e-83 seq351 129 6e-25 seq761 87.8 2e-12 seq258 84.2 2e-11 >seq656 Length=490082 Score = 324 bits (358), Expect = 1e-83 Identities = 1007/1543 (65%), Gaps = 42/1543 (3%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || || | |||| || | ||| ||||| |||| ||| || | Sbjct 300689 GCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCC 300630 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || | | || | |||||||||||||||| ||||| | Sbjct 300629 TGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAG 300570 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 |||| | |||||||||||| || | |||||| ||| | || ||| | || | Sbjct 300569 CGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 300510 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTC 148468 | || |||||| | ||||||||| | ||| | || ||| | ||||||||| Sbjct 300509 TCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTG--GGAGTCTTCTCCCACATGTC 300452 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || ||||| ||| | || ||| ||||||| ||| || || || | Sbjct 300451 GTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTC 300392 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 ||||||||||||||||| ||||| || ||| ||||||| || |||||| || || | Sbjct 300391 TGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGAT 300332 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 ||||||||| || ||||||| |||| ||||| | | | || ||||| || Sbjct 300331 GTTGAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGC 300272 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC-GCTCT 148707 | ||||| || || | || ||||||||||| ||||||| | | | ||| | Sbjct 300271 CAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGA---CCTCTCTGCT-T 300216 Query 148708 CG---AGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 || | || |||| |||| || |||||||||| || || ||| | |||||| | Sbjct 300215 CGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGG 300156 Query 148765 TAATTCTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGG 148821 | | | |||| | ||| ||| | | ||| || | | ||| | || Sbjct 300155 TGACCGAGGCCAGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGG 300096 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 |||| ||||| || || || || ||| ||| ||| | | ||||||| |||||||| | Sbjct 300095 CGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCG 300036 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 ||| || |||||||| ||||| ||||| ||||| || |||||||| |||||||| | Sbjct 300035 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 299976 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC 148998 |||||||||| |||||||| || || |||||| ||| | || | || | ||| Sbjct 299975 CGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACC 299916 Query 148999 GA---TGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAG 149055 | ||| | ||| | | ||| | || | | | || |||| || ||| || Sbjct 299915 AAACCTGCTGAGCCTTCAC---CACCTTCTTCAC---CCTCCCTTCCTTTTCATATTTAG 299862 Query 149056 TATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGC 149115 | || ||| ||| ||| |||| || |||| ||||| || ||||| |||| || || | Sbjct 299861 TGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGAC 299802 Query 149116 ACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGA 149175 |||| || ||||| | || | ||| | |||||| ||||| || || | ||| | Sbjct 299801 ACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACA 299742 Query 149176 GCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTT 149233 ||||| | ||||| | || | ||| || || || |||| ||| | Sbjct 299741 TGGCGTAGAATAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTC 299684 Query 149234 GAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG 149293 || | | ||| | || |||||||||||| | ||||| |||| || ||| || Sbjct 299683 CAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCG 299624 Query 149294 C---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTC 149350 | ||||| |||||||| || | ||| | ||||||| | || || | ||| || | Sbjct 299623 CTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGAC 299564 Query 149351 AATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGT 149409 | ||| ||| |||||||||| ||| ||| || || || || | | Sbjct 299563 CAGCCCATTGGAGTTGCCGTTAGTGCCAGC-GATGTAGCTCCCAGTCGATCTGATGCAGC 299505 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469 ||| |||||||| ||||| || | || || ||| ||||| | || || Sbjct 299504 TCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGT 299445 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 ||||||||||||||||||||| |||||||| ||||| ||||| | ||| |||| Sbjct 299444 CGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCG 299385 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 || ||||| ||| | ||| || |||||| || || | |||| || Sbjct 299384 CCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACA 299325 Query 149590 TCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGC 149649 || | ||| | ||| | || ||| ||||| | || ||||| || | | || | Sbjct 299324 GCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCC 299265 Query 149650 GCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAGC 149706 ||| ||||| |||||||| ||||| |||||||| ||| || || |||| ||| Sbjct 299264 TCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGATAGG 299208 Query 149707 CGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTC 149749 | || || || ||| |||||||| | |||||| ||| || Sbjct 299207 AGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATC 299165 >seq351 Length=862037 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 703917 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 703859 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 703858 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCT 703799 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| | |||||||| || | ||||| ||| || ||||| || | Sbjct 703798 TGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGG 703739 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 703738 TCTTCACAAAGATCTGCATG 703719 >seq761 Length=414005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 || ||||| || || | ||||||||||||| ||||||| ||||| || | || ||| Sbjct 275193 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 275252 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 |||| |||||||| ||||||||||| |||||||| || Sbjct 275253 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 275290 >seq258 Length=1028905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||||| || |||||||||||||| | ||| |||| | |||| ||| Sbjct 692621 ATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTCAGCCAGAAGATG 692562 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||||||| ||| || ||||| | ||||||||| ||| || || |||| ||||| Sbjct 692561 GCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACGCCACCACACGCTC 692503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483364850085160