Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq659 91.5 2e-13 >seq659 Length=488568 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 176937 AGGTGCGAGGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCC 176996 |||| | |||||||||| | || || || | || | ||| || || || || ||||| Sbjct 1988 AGGTACTCGGCCAGTTCTTTGGGTGATTTGAAATCATCCACATGGATAAAGGCATCTCCT 2047 Query 176997 GGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCC 177056 || || | || || || |||| ||| ||| ||||| || | || || | |||| Sbjct 2048 GGAACAAAGTTCTCATAGTTCTGTCTGCTTGTGCCGAGAACCACTGGCACTG----TGCC 2103 Query 177057 ATAAGAGATCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAA 177112 |||| | || || |||||||| || || |||||| |||| || ||||||||||| Sbjct 2104 CAAAGACAGGGGGTTGTACAGTTTTTCAGTGATGTAGTCCTTGTGGACTGAGTTCTCAAA 2163 Query 177113 CGCGAGATAGAATTTACAGGAAGATA 177138 | | ||||||||||||| ||||| Sbjct 2164 GGACAAATAGAATTTACAGCTAGATA 2189 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/259 (67%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 176884 TTTTCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCG 176943 || |||| ||||||||| || ||||| ||| || || | | | |||| | Sbjct 13925 TTCTCCATTTAAAGTATGAGAGGTAAAGTTCCTGGTTCTTGTCCAAGAGGAGCAGGTACT 13984 Query 176944 AGGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGT 177003 |||||| ||| | || || || | || | ||| || || ||||| ||||| || || Sbjct 13985 CGGCCAGCTCTTTGGGTGATTTGAAATCATCCACATGGATAAAAGCATCTCCTGGAACAA 14044 Query 177004 AATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAG 177063 | || || || |||| ||| ||| ||||| | | || || | |||| |||| Sbjct 14045 AGTTCTCATAGTTCTGTCTGCTTGTGCCGAGAGCCACTGGCACTG----TGCCCAAAGAC 14100 Query 177064 ATCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGA 177119 | || || |||||||| || || |||||| |||| | ||||||||||| | | | Sbjct 14101 AGGGGGTTGTACAGTTTTTCAGTGATGTAGTCCTTGTGGGCTGAGTTCTCAAAGGACAAA 14160 Query 177120 TAGAATTTACAGGAAGATA 177138 |||||||||||| ||||| Sbjct 14161 TAGAATTTACAGCTAGATA 14179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578365053726400