Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq656 244 1e-59 >seq656 Length=490082 Score = 244 bits (270), Expect = 1e-59 Identities = 957/1488 (64%), Gaps = 40/1488 (3%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | ||| | ||||| || ||||| | || || || |||| || || Sbjct 300615 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTG 300556 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 |||||| |||| || || || | || |||| ||| || ||||||| Sbjct 300555 GGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 300496 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 || || |||||||||||| | ||| ||| | |||||||||||||||||| | || Sbjct 300495 AGCTT-CCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCC 300437 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCAC 147175 | ||| | || ||| || |||| ||| || || |||| |||| ||| | Sbjct 300436 TTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGC 300378 Query 147176 AGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 |||| ||||| || || | ||||| ||||| ||| ||| || |||| || | | Sbjct 300377 AGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAG 300318 Query 147236 CTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATAC 147295 ||||| ||| ||| | || ||||| || | ||||| || ||||||||||||| | Sbjct 300317 CTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTC 300258 Query 147296 CGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGT 147355 ||| ||||| || || || || |||| | || || | || ||| |||| || Sbjct 300257 CGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGT 300198 Query 147356 TGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCT 147415 || ||||| |||||||| ||||| ||| | || || || | | || |||| Sbjct 300197 TGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCT 300138 Query 147416 CGAAATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGA 147474 || || |||||| || || |||||| || ||| | |||||| || ||||| Sbjct 300137 TAAAGTCGAAAGTCCGCTCAGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGG 300082 Query 147475 TTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTG 147534 || ||||| ||| ||| || | | |||||| |||||| || | ||| ||||||||| Sbjct 300081 TTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTG 300022 Query 147535 CATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGC 147594 || || ||| |||| || ||||| ||||| |||| ||||| ||||| ||| | ||| Sbjct 300021 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGC 299962 Query 147595 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGT 147646 ||||| || ||||| || || | || | ||| ||||| ||| | Sbjct 299961 ATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC--TGCTGAG 299904 Query 147647 CCTGCGCTCGCACCCGCTGCCGATAGCGGCCC-TCGTTTTCGTACCGCTCGTACAACCGC 147705 ||| | | |||| || | | | ||| || ||||| || ||| | | | Sbjct 299903 CCTTCAC---CACCTTCTTC----ACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC 299851 Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765 |||||||| || || |||| ||| | || |||||||||| | ||||||||||| ||| Sbjct 299850 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGAC 299791 Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825 || | || | || | ||| ||||| || || | ||||| ||||| | Sbjct 299790 CAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAT 299731 Query 147826 AGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTAT 147883 || || | || || ||| ||||| || |||| |||| | || | | Sbjct 299730 AGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 299673 Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGC 147940 | | || |||||| || || | ||| | ||| | || || ||| || || | Sbjct 299672 ACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCAC 299613 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 ||||||| |||| ||| | ||||||| | || |||| ||| || |||| || | | Sbjct 299612 CCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGG 299553 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 ||||||| ||| | ||| | ||| || | || | | ||| |||| Sbjct 299552 AGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGC 299493 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 | || ||||| || | || || ||| ||||| | || || ||||||||| | Sbjct 299492 CGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCT 299433 Query 148121 CGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGT 148178 |||||||||| | || | | | |||| || || ||| |||| ||| | Sbjct 299432 CGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCG---CCCGGTTGG 299376 Query 148179 TCCCGCCG-AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGAT 148237 ||||| || ||| ||||| || ||||| || ||| | || | || || | | Sbjct 299375 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 299316 Query 148238 ACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 | |||||||| ||| | || ||||| | ||||| || || | || || | |||||||| Sbjct 299315 AGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCA 299256 Query 148298 TGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGG 148357 ||||||| || || ||||| |||| ||||||||| || ||||| || |||| Sbjct 299255 TGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGG 299196 Query 148358 TTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 ||||| | |||||| | ||||| ||||||| || ||| ||||| Sbjct 299195 TTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 299148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476556038211240