Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq86 100 9e-18 seq458 98.7 3e-17 seq453 98.7 3e-17 seq341 98.7 3e-17 seq17 98.7 3e-17 seq164 95.1 4e-16 >seq86 Length=1669145 Score = 100 bits (110), Expect = 9e-18 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 2750 TCTTTGTACTGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT 2809 ||||| ||| |||| || ||| |||||||||||||||||| ||||||||||||||| Sbjct 600769 TCTTTTTACGGTGTA----GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCT 600824 Query 2810 AAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||||||||| | |||||| ||| || Sbjct 600825 AAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 600855 >seq458 Length=698086 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 223031 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 223090 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 223091 CCGGGTTTCGGC 223102 >seq453 Length=705204 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5506 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5565 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5566 CCGGGTTTCGGC 5577 >seq341 Length=879776 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 879313 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 879372 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 879373 CCGGGTTTCGGC 879384 >seq17 Length=2645025 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2529757 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2529698 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2529697 CCGGGTTTCGGC 2529686 >seq164 Length=1312197 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 1072048 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 1072107 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1072108 CCGGGTTTCGGC 1072119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847994906055