Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1203 127 2e-24 seq155 127 2e-24 >seq1203 Length=218618 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 |||||| || || | || || | |||||||||||| || | |||||||| |||||||| Sbjct 2121 CTTAAGTCCTGTAATATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAA 2062 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||| || |||||||| |||| | |||||||||||| || || ||||| || || Sbjct 2061 AGGCACCCCTAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATC 2002 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| ||| |||||| || ||||| ||||| Sbjct 2001 ACAGACATAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1957 >seq155 Length=1349651 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 |||||| || || | || || | |||||||||||| || | |||||||| |||||||| Sbjct 1338988 CTTAAGTCCTGTAATATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAA 1338929 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||| || |||||||| |||| | |||||||||||| || || ||||| || || Sbjct 1338928 AGGCACCCCTAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATC 1338869 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| ||| |||||| || ||||| ||||| Sbjct 1338868 ACAGACATAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1338824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583420468557600