Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq362 167 3e-35 seq608 165 1e-34 seq1535 149 9e-30 seq656 122 1e-21 seq1136 102 1e-15 seq1319 98.7 1e-14 seq299 93.3 6e-13 seq304 87.8 3e-11 seq258 86.0 9e-11 >seq362 Length=835642 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || || |||| |||| ||| |||| ||||| Sbjct 582460 TACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCCTCCAAGGCCATG 582407 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | |||||||| ||| Sbjct 582406 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGC 582347 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 582346 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 582287 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| || || |||||||||| Sbjct 582286 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 582238 >seq608 Length=533172 Score = 165 bits (182), Expect = 1e-34 Identities = 168/218 (77%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 50066 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 50119 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 50120 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCTTCCCGC 50179 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 50180 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 50239 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 || | ||| ||| || ||||||| |||||| || || Sbjct 50240 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCAGTGTC 50277 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || ||| ||||| Sbjct 44418 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCTTCTAAGGCCATG 44471 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||||||||| |||| ||| || | ||||||| || Sbjct 44472 AGCATCATGAATTCGTTCGTCAACGACATCTTCGAGGGCAACGCCTCCGAGGCTTCAGGC 44531 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 44532 CTGGCTCCCTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 44591 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| || || ||||| |||| Sbjct 44592 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCAGTGTCTGAGGGAACCA 44640 >seq1535 Length=133350 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || || |||| |||| || |||| ||||| Sbjct 123847 TACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCTTCCAAGGCCATG 123900 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||| ||||| | || ||||||| | | ||||| ||| Sbjct 123901 AGCATCATGAACTCCTTCGTCAGTGACATCTTTGAGCGCATCGCCTCAGAGGCTTCTCGT 123960 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 123961 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 124020 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 124021 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 124069 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 725045 CAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCG 725104 |||||||||| ||| ||| | | | ||||||||||||||||||||||| | ||| Sbjct 121250 CAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTCCTGCTGCC 121309 Query 725105 CGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || ||||||| ||||||||| || |||||||||| Sbjct 121310 CGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 121347 >seq656 Length=490082 Score = 122 bits (134), Expect = 1e-21 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || |||| || ||||| || ||||| || || Sbjct 299325 TGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGG 299384 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||||||||| | Sbjct 299385 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACG 299444 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||| || ||||||||||| ||||| ||||| | || ||||| ||||| | || | Sbjct 299445 ACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGG--- 299501 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | | | || |||| | || ||||| |||||| | ||||| || Sbjct 299502 -TGAGCTGCATCAGATCGACTGGGAGCTACATCGCTGGCACTAACGGCAACTCCAATGGG 299560 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || ||||| || |||| ||| |||| || ||||| || |||||| Sbjct 299561 CTGGTCCCGATGCTGCGGGTTTACAACAACACCGCCCGCTATGTTGACCAG 299611 Score = 104 bits (114), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | ||||||||||||| | || | |||||||||||||||| |||| | Sbjct 300537 TGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTGGGCAACAACGAGTCCA 300596 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| | ||| |||||||||||||| ||| | || ||||| || || || | | Sbjct 300597 TCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTCCAGATCG 300656 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||| | ||||| ||||| | || || ||| || ||||||| Sbjct 300657 TCAATCCTCACCTTCTCAAGGACCTGACGGAGCGGGGGCTGTGGA 300701 Score = 102 bits (112), Expect = 1e-15 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | || ||||| |||||||||||| | ||| Sbjct 299909 CAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACCGGGACGCCCTACATGCTTTAC 299968 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 ||||||||| |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 299969 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 300027 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||| |||||||| Sbjct 300028 CCTCTGCACGGAGATCGT 300045 >seq1136 Length=239220 Score = 102 bits (112), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 || |||||||| || || |||||| | |||| || |||| |||||| || ||| || Sbjct 202114 ATTATGAACTCCTTCGTGAACGACCTTTTCGAGCGGATCGCCACCGAAGCGTCCCGCTTG 202055 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | | |||||||||| ||| ||| || | ||| | ||||||||||| | ||| Sbjct 202054 GCTCAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCGTCAGGCTG 201995 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || || ||||||| |||||| || ||||||||||||| Sbjct 201994 CTGCTGCCGGGGGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCA 201949 >seq1319 Length=183801 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| ||| ||| | | | |||||||||||||||||| Sbjct 4965 CGTCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTG 4906 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 4905 CGCCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 4854 >seq299 Length=950331 Score = 93.3 bits (102), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 217142 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 217083 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 217082 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 217034 >seq304 Length=939584 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||| Sbjct 656912 GCCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGC 656971 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| |||||| || || ||||| |||| Sbjct 656972 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCAGTGTCTGAGGGAACCA 657022 >seq258 Length=1028905 Score = 86.0 bits (94), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||| || || ||||||| | | || || || |||||||||||||| || |||||| Sbjct 692134 GAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCAGATCGCCATGGAGAACATC 692193 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||| || | ||| || ||||||||||||||| ||||||| || Sbjct 692194 CACTCAGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCC 692240 Score = 86.0 bits (94), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||| || || ||||||| | | || || || |||||||||||||| || |||||| Sbjct 707097 GAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCAGATCGCCATGGAGAACATC 707038 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||| || | ||| || ||||||||||||||| ||||||| || Sbjct 707037 CACTCAGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCC 706991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176918152431958