Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq351 122 8e-23 >seq351 Length=862037 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 703911 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 703852 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 703851 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTT 703792 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | ||||| || ||||| || | || ||||| Sbjct 703791 CTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCAC 703732 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 703731 AAAGATCTGCAT 703720 Score = 105 bits (116), Expect = 6e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 |||| || ||| || | || ||||||||||| || || || |||| || ||||||||| Sbjct 686720 TCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCA 686661 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT 35683 | || | || |||||| || |||||| ||||| | || | | |||||||| | Sbjct 686660 GGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGC 686601 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||||||||| ||||| || || || || | ||||| || || ||||||||| ||| Sbjct 686600 TCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTTGT 686543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450741426275720