Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq656 136 4e-27 seq351 107 2e-18 >seq656 Length=490082 Score = 136 bits (150), Expect = 4e-27 Identities = 300/449 (67%), Gaps = 3/449 (1%) Strand=Plus/Plus Query 7529 TGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGG 7588 || |||| |||||||| || || || || || |||||||| || | ||| ||| Sbjct 299214 TGCTGAAGATCAACGGGAAAGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGG 299273 Query 7589 TGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGA 7648 | || || ||||| ||||||||||||||||| | || || ||| | || |||| || Sbjct 299274 TCGGTATCCACGGAAAAGACATTGACGCCGCCATTGAGACCTACAACCTGCTGTCGGAGA 299333 Query 7649 AACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGT 7708 | ||| || ||||| ||||| ||| | || ||| || || ||| | | || ||| Sbjct 299334 AGTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGGCGCAGCTGT 299393 Query 7709 CCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGC 7768 || || || |||| ||||| || ||||||||||| ||||| ||| |||| ||| Sbjct 299394 CCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGA 299453 Query 7769 GCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGC 7828 | |||||| |||||||||| || ||||| || || || || | | | | Sbjct 299454 AGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCA 299513 Query 7829 GCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGT 7888 | | | || ||| ||||| ||| ||||| || ||| || | | || ||| Sbjct 299514 GATCGACTGGGAGCTACATCGCTGGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGC 299573 Query 7889 TGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCG 7945 |||| || | ||| ||| | | || |||| |||||||| || ||||| || | Sbjct 299574 TGCGGGTTTACAACAACACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAG 299633 Query 7946 CCGCTGCCATCTATTTGGAGCCGTGGCAC 7974 || ||||| || |||||||||||||| Sbjct 299634 CCTTCGCCATGTACCTGGAGCCGTGGCAC 299662 Score = 134 bits (148), Expect = 1e-26 Identities = 461/712 (65%), Gaps = 15/712 (2%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||| | ||| | |||||||| | ||| |||||||| ||||| ||||| || Sbjct 299920 CGCCATCATCGAGTCTCAGACGGAAACCGGGACGCCCTACATGCTTTACAAGGACGCCTG 299979 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || ||| |||||||||| |||||||| || ||| | || Sbjct 299980 CAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGA 300039 Query 8352 AATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTT 8411 || || |||||| | ||||| ||||| || || || || || || | | Sbjct 300040 GATCGTGGAGTACACCAGCAAGGACGAGGTGGCGGTCTGTAACCTGGCCTCCATCGCCCT 300099 Query 8412 AAACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCC 8469 ||| || ||| |||| | | |||| ||||||| | | || | | Sbjct 300100 CAACATGTACGTC-----ACGCCTGAGCGGACTTTCGACTTTAAGAAGCTGGC---CTCG 300151 Query 8470 GTG--CAAG-TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTG 8526 || |||| ||| || || | | |||||||| |||| | || ||| | Sbjct 300152 GTCACCAAGGTGATCGTGAAGAACCTGAACAAGATCATTGAGATCAACTACTACCCCGTA 300211 Query 8527 GAAGAAGC-GCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCT 8585 ||||| | | | || |||| |||||| | ||| | || | || || || ||| | Sbjct 300212 CCCGAAGCAGAGAGG-TCCAACAAACGCCACCGGCCCATCGGGATCGGAGTCCAGGGTTT 300270 Query 8586 GGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAA 8645 ||| ||||| || | || |||| ||| | |||||||| |||||| | ||||||| Sbjct 300271 GGCAGACGCCTTCATCCTGATGCGTTACCCGTTCGAAAGCCCAGAAGCTCAACTGCTCAA 300330 Query 8646 CATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCG 8705 ||| | || || || | || |||| ||| | || |||||||| |||| || Sbjct 300331 CATCCACATCTTCGAGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGAACTGGCGGC 300390 Query 8706 AGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATA 8765 ||| |||| | ||||| |||||| ||| |||| |||| || || | || || Sbjct 300391 AGAGCTGGGTCCTTACGAGACGTACGAAGGCTCACCTGTCAGCAAAGGCATCCTCCAGTA 300450 Query 8766 CGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAAT 8825 |||||||||| | || |||||| ||||| | |||| |||| || || Sbjct 300451 CGACATGTGGGAGAAGACTCCCACCGACATGTGGGACTGGAAGCTGCTGAAGGAGAAGAT 300510 Query 8826 TGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGC 8885 || || ||| || | || ||| || |||| ||||||||| ||| | || || Sbjct 300511 CGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGC 300570 Query 8886 TCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 ||| || |||| |||||||| ||| | ||| | | ||||| |||| | ||| Sbjct 300571 TCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTAC 300622 >seq351 Length=862037 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 703946 CCACCCCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 703887 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 703886 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 703827 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 703826 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACC 703767 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || ||||| |||||||| | || || || || || ||||| || ||| Sbjct 703766 TCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATGTTTTTT 703713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505339906452680