Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq656 446 2e-120 seq761 105 9e-18 seq197 93.3 6e-14 >seq656 Length=490082 Score = 446 bits (494), Expect = 2e-120 Identities = 1296/1984 (65%), Gaps = 27/1984 (1%) Strand=Plus/Minus Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 ||||||||||| | || || | | | ||||| ||||| || ||||||| | | Sbjct 300747 TGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCCGC 300688 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 ||||| | | | || || || ||||| || || || || || || || | || || Sbjct 300687 TCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTG 300628 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 || ||||| || || ||||| || | || | || || || || ||||| || ||||| Sbjct 300627 CGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCG 300568 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT 68862 || || || || ||||| || |||| || | || || || | || ||| | ||| Sbjct 300567 GTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATC 300508 Query 68863 TTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA--CAACATTCCAAAGATCGT 68920 || || || || | ||||| ||||| | || | ||| | | | | ||| | |||| Sbjct 300507 TTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGG-TGGGAGTCTTC-TCCCACATGTCGT 300450 Query 68921 ATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTT 68980 | || || || || || || || ||| || | || || || ||||| || || | Sbjct 300449 ACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTG 300390 Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 | || ||||| || || ||||| | || |||| || || || ||||| || | | | Sbjct 300389 CCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGT 300330 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCA 69100 |||| ||| |||||| | || ||||| || ||| | | || || || || ||||||| Sbjct 300329 TGAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCA 300270 Query 69101 ATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAA 69160 | ||||| || || || ||||| || | || | || || || || || ||||| || | Sbjct 300269 AACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTA 300210 Query 69161 TAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTA---ACCA 69217 || || || || || || || || || || || || || | || || ||| Sbjct 300209 CGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCG 300150 Query 69218 CGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATAACAAACATATTCAGTGCTA 69274 | || || || ||| || || || || | || |||| || || || | Sbjct 300149 AGGCC---AGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGA 300093 Query 69275 CAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTAC 69334 || || || ||||| || || ||||| | | | || | | ||||| || | Sbjct 300092 TGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGC 300033 Query 69335 ATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGT 69394 | || || || || ||||| || ||||| || ||||| || ||||| |||| ||||||| Sbjct 300032 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 299973 Query 69395 CCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAA 69454 |||||||||| || | || || || ||||| ||||||| ||||| || | | ||||| Sbjct 299972 CCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAA 299913 Query 69455 CGACCCTAGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAG 69512 | | ||| || | || ||| | || || | || |||||||||| || || || Sbjct 299912 CCTGCTGAGCCTTCACCACCTTCT--TCACCCTCCCTTCCTTTTCATATTTAGTGTAGAG 299855 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 | || || || || ||||| || |||| || ||||| || || |||||||||| Sbjct 299854 CTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 299795 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 ||||| | | | || |||| ||||| || || || || ||||| | || Sbjct 299794 GGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 299735 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 || || ||||||| ||| | || || |||||||| || || || || || || || || Sbjct 299734 GAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTC 299675 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | | |||| | ||||| || || || || || || | | |||||||||| || || || Sbjct 299674 GAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCC 299615 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 ||||| || | || | ||| ||||| || || || | ||||||||| | | ||||| Sbjct 299614 ACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATT 299555 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 || || || || || |||| || || || || | | | || || | | | Sbjct 299554 GGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCAC 299495 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 || || || || || ||| || || || || || | |||| ||||| || || || Sbjct 299494 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 299435 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT 69992 ||| ||||| ||||| ||||| || || || ||||| |||| || | | || Sbjct 299434 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGT 299375 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || || || || | || || || ||||| |||||||| || || || ||||| ||||| Sbjct 299374 CCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 299315 Query 70053 TGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 || ||||| || | || || || || || || | || || | ||| | ||| Sbjct 299314 GGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCAT 299255 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 ||||| || || || || ||| || || |||| ||| || || ||||| || Sbjct 299254 GTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGT 299195 Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 ||| || ||||| ||||||| ||||| ||||| || ||||| || ||||| || Sbjct 299194 TTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCG 299135 Query 70233 ATCCTTATATTTGGTAACTATATCCA-TAACAGTAGGTGAGATAATCGGAGATCGTTTAC 70291 || || | | ||| || || | | | | ||||| || || || | Sbjct 299134 GTCTTTGTTCTCCAGAACGATGTCGAGGGTCTGCTTG-GAGATCATGGGGGA----GTGG 299080 Query 70292 CATTTTT----AGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttt 70347 ||||| | ||| || || |||||| | | |||||||| || || || |||| ||| Sbjct 299079 CATTTGTTCAGAGGGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTC 299020 Query 70348 tttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGA 70407 || || |||||||| | || || | ||| || ||||| || || || || ||||| || Sbjct 299019 TTGGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGG 298960 Query 70408 TGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 || | || || || || || || ||||| |||| ||| |||| || | || || Sbjct 298959 TGCTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTG 298900 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCT 70527 || ||| | || | || || || || ||||||| || | | ||||| | ||| ||| Sbjct 298899 ACGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCT 298840 Query 70528 GTGTTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAACATTC 70587 | |||||||| || || | || ||||| || || |||||||| ||||| || | Sbjct 298839 GCATTCAGACCGTAGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGACGCGC 298780 Query 70588 TCCT 70591 |||| Sbjct 298779 TCCT 298776 >seq761 Length=414005 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 ||| ||||| || ||| ||||| || ||||| || ||||||| || ||||||||||||| Sbjct 275188 TTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCT 275247 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || |||| |||| |||||||||||||| || || | |||||||| || || ||| Sbjct 275248 GGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCT 275307 Query 69431 GAGATTCGATAAT 69443 | || || || || Sbjct 275308 GCGACTCAATGAT 275320 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||||||||||| ||||| || | |||||| || | || || || || ||||| | Sbjct 272664 TCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCGATGTGAATGT 272723 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| ||||||||| ||| || | |||||| ||||| || | | | ||| Sbjct 272724 TGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 272783 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || ||||||||||| Sbjct 272784 TCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAATATCATCTGG 272832 >seq197 Length=1194064 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || || || || || || ||||| || || | ||| || Sbjct 1112710 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTT 1112651 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| | ||||||||||| || || || |||||||| || ||||| |||||||| || Sbjct 1112650 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 1112591 Query 39761 ACAAGTCTCTCTCC 39774 || |||| ||| || Sbjct 1112590 ACCAGTCGCTCCCC 1112577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686829298892760