Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1203 95.1 1e-14 seq155 95.1 1e-14 seq753 93.3 3e-14 >seq1203 Length=218618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 ||| ||| | | ||||| |||| || || || | || ||||| || || || || Sbjct 1945 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTCTGTGAT 2004 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || ||||||||||| |||| || | || | |||||||| |||||||| || || Sbjct 2005 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 2064 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| || || ||||| || ||||| || ||||| ||||| |||| Sbjct 2065 AACATCGCCAGCTATGCCCTTCTCACCTACATGATCGCACATATTAC 2111 >seq155 Length=1349651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 ||| ||| | | ||||| |||| || || || | || ||||| || || || || Sbjct 1338812 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTCTGTGAT 1338871 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || ||||||||||| |||| || | || | |||||||| |||||||| || || Sbjct 1338872 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 1338931 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| || || ||||| || ||||| || ||||| ||||| |||| Sbjct 1338932 AACATCGCCAGCTATGCCCTTCTCACCTACATGATCGCACATATTAC 1338978 >seq753 Length=419124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 8/130 (6%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||| |||||| | || || ||||||||||||| ||||| | |||||| Sbjct 100664 CCAGACCACCTGCAGCTCAGAGTTCAGAAGGTCCAGCTTCATGAAGTCCTGTTTGTTGG- 100722 Query 77371 AACTGACC-CTCCGCCA---TGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACT 77426 ||| | |||| ||| | ||||||||| |||||| ||||||||||||| ||||| Sbjct 100723 ---TGATCTCTCCTCCAGATTTCAGCCTCCAACCGTTCAGCTTCCAGTTCTTCACCCAAC 100779 Query 77427 TAGTCACACC 77436 | |||||||| Sbjct 100780 TGGTCACACC 100789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397411149450295