Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq656 194 2e-44 seq761 91.5 2e-13 >seq656 Length=490082 Score = 194 bits (214), Expect = 2e-44 Identities = 959/1503 (64%), Gaps = 64/1503 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | ||||| |||| ||||| ||||| Sbjct 300715 CTTCATCTCCTCGTTCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGAC 300656 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| || | ||||||||| | ||||| | || | Sbjct 300655 GATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 300596 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 300595 GGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAG 300536 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| ||||| || | | |||||| | || Sbjct 300535 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTC 300476 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | | || || || |||||||||| |||| || | |||| | | || || || | Sbjct 300475 GGTGGGAGTCTTCT-CCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTT 300417 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 | | || || || | ||| | || | |||| ||| ||||| |||||||||| |||| Sbjct 300416 CGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGT 300357 Query 110973 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 111024 || ||||| || ||||| | |||| || | || || ||||| || Sbjct 300356 AGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTT--------TC 300305 Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 || | ||| || || || || | || || | ||| || || || | || || || Sbjct 300304 GAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGG 300245 Query 111085 TCTGTGTCGCATATTAGACTT-TC-GCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 | ||| || | || ||| | || || | | ||||| || | || | |||||| Sbjct 300244 CCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT--ACGGGGTAGTAGTTGATCTCAATG 300187 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | ||| || || || | | ||| |||| || || | | | || ||| Sbjct 300186 ATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCGAAA 300127 Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 || || ||| |||| ||| | |||||||| || |||| || || || ||| Sbjct 300126 GTCCG---CTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCC 300070 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| ||||| |||||||| | || || || || | |||| | ||| || || Sbjct 300069 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTG 300010 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 |||| |||| ||||| |||||| ||||||| || |||||||| ||||||||||||||| Sbjct 300009 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTC 299950 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGC 111441 || || |||||||| || | || || || | |||||| | | | | || || | Sbjct 299949 CCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT-TCACCACCTT 299891 Query 111442 GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 111501 || ||| || ||| || || || |||||||| ||||||||||| ||| | || Sbjct 299890 CTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 299832 Query 111502 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTC 111558 ||| || || || || || ||||| | || ||||| | || || ||| Sbjct 299831 ACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCA--GTCCTGGTTGCTCTC 299774 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 || | ||||||||| ||||| || ||||||| || | || || ||||| | Sbjct 299773 CACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTG 299714 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||| || | ||| ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 299713 CTCCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACG 299655 Query 111678 GCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCG 111734 |||| || || | |||| | |||| ||| ||| | || | |||||||| | Sbjct 299654 GCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGG 299595 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 111794 | ||| ||| | || || ||||| || | | |||| || | || || || || Sbjct 299594 CGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCC-- 299537 Query 111795 GAATACGAGATTTATTGGCTCTCA---CATC--ATGGATGT-----GCATCCCAATACCC 111844 | ||| || |||| || ||| ||| | | || || || || Sbjct 299536 -----AGCGATGTA---GCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCG 299485 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| | || || || | || |||| | | || || | ||||| || | ||| | Sbjct 299484 CCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTG 299425 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCAT 111962 || ||||| |||||| |||||||| ||||||| ||||| | ||| || || || | Sbjct 299424 TCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTG--GTCCCGGCGT 299367 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCC 112021 ||||||||||||| | ||||| ||||| || | | |||| | || ||| ||||| Sbjct 299366 TGAAGAGGGTTGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCA 299308 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGT 112081 | | | | |||||||||| |||||||| |||| | |||| ||||| ||||| ||| Sbjct 299307 ATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGC 299248 Query 112082 GGG 112084 ||| Sbjct 299247 GGG 299245 >seq761 Length=414005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| || ||| ||| || |||| |||||||| || | ||| || || || || Sbjct 275177 CTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCC 275236 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || |||||||||||||||||||| || || Sbjct 275237 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACC 275296 Query 111385 CGTCTCCGTCTGTGA 111399 |||||| ||||| || Sbjct 275297 CGTCTCTGTCTGCGA 275311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627959313146400