Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq656 203 4e-47 seq761 95.1 1e-14 seq197 95.1 1e-14 seq258 91.5 2e-13 >seq656 Length=490082 Score = 203 bits (224), Expect = 4e-47 Identities = 884/1383 (64%), Gaps = 28/1383 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| || || |||||| Sbjct 300621 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAG 300562 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 300561 GCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 300502 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 || || ||| ||| |||| | || | | | || |||||| || ||||||| Sbjct 300501 TTCAGCAGCTTCC-AGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAG 300443 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 ||| |||| | | || || || || | ||||| || || ||| | |||||| Sbjct 300442 GATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAG 300383 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 |||| |||| ||||| ||||| |||| || || || || || ||| | || | || Sbjct 300382 TTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGA--GC 300325 Query 118481 C-TTGGCCTCGTCGGAAT-CAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 118538 ||| || | || | | |||| | || || || || | || || | ||| Sbjct 300324 AGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCC 300265 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGC----GGTCTCCAC 118594 ||||| |||| || || || || || | | || ||| || || ||| || Sbjct 300264 TGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT----AC 300209 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 ||| || | || | || || | | | || || || || || ||||| |||| Sbjct 300208 GGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGA 300149 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 ||||| | | || ||| | || ||| |||| ||| | |||||||| Sbjct 300148 GGCCAGCTTCTTAAAGTCGAAAGTCCG---CTCAGGCGTGACGTACATGTTGAGGGCGAT 300092 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || ||||| ||||| || | ||| ||||| |||||||| | || |||||||| Sbjct 300091 GGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCA 300032 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 | ||| | ||| |||||||||| ||||| || || ||| |||| || || || Sbjct 300031 GAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 299972 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||||||||||||| |||||||| || ||||| || |||| || || || | ||| || Sbjct 299971 CTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAAC 299912 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 | ||| ||| || | | ||| || | || || || |||||||| Sbjct 299911 CTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTT 299852 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| || ||| | ||| ||||| || || | || || | || || Sbjct 299851 CTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGA 299792 Query 119015 CCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 119072 ||| | || | ||| || | ||||||||| ||||| |||||||| | || || Sbjct 299791 CCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAG 299734 Query 119073 AAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 119131 || || || | | | ||| || | | || || || || ||||| ||||| Sbjct 299733 AATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTC 299675 Query 119132 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CC 119188 | | ||| ||||||||| |||||||||| |||| | ||| || || Sbjct 299674 GAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCC 299615 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 | |||||| ||||| | || ||| ||| | || || ||||| || | | |||| Sbjct 299614 ACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATT 299555 Query 119249 GGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCAT 119308 ||| | ||| || || || || | | | | ||||| | | || Sbjct 299554 GGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCAC 299495 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 || || || || || | || || || | ||||||| | | || || ||||||| || Sbjct 299494 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 299435 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| |||| |||| | |||| ||||||||||| |||| || | || | || Sbjct 299434 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGT 299375 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 || ||||||||||| ||||| | |||||| ||||| || | | |||| | || || Sbjct 299374 CCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGT 299316 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 ||||||| | | ||||| |||||||| ||||| ||||||| ||| |||| ||| | || Sbjct 299315 AGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCA 299256 Query 119548 TGT 119550 ||| Sbjct 299255 TGT 299253 >seq761 Length=414005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 273630 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 273689 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||||||||||| Sbjct 273690 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 273721 >seq197 Length=1194064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 130048 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107 |||||||||||| |||||| || || |||||||| || | |||||| | |||| | || Sbjct 1112699 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTTAGCCAGTAGAT 1112640 Query 130108 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| ||||||||| ||||||||||||||||| ||| || || || | || ||||| Sbjct 1112639 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 1112580 >seq258 Length=1028905 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 692515 CCACCACACGCTC 692503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 706716 CCACCACACGCTC 706728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618363623856040