Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq656 172 6e-38 seq197 86.0 7e-12 >seq656 Length=490082 Score = 172 bits (190), Expect = 6e-38 Identities = 575/884 (65%), Gaps = 37/884 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||| | ||| | ||||||| || || |||||||||| | | Sbjct 299245 CCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGACATTGACGCCGC 299304 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||| | | || ||||| ||||| | |||||||||| Sbjct 299305 CATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCAACCCTCT 299363 Query 104340 TCAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||| || || || ||| | | || ||||||| |||||||| |||||| ||||| Sbjct 299364 TCAACGCCGGGAC--CAACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 299421 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||| ||| | || ||||| | || || | | |||| || | || || || | || Sbjct 299422 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 299481 Query 104458 TGGGGGTATTGGGATGC-----ACATCCAT--GATG---TGAGAGCCAATAAATCTCGTA 104507 ||| || || || || | | ||| ||| || |||| || ||| | Sbjct 299482 TGGCGGGATCGGCGTGGCGGTGAGCTGCATCAGATCGACTGGGAGC---TACATCGCT-- 299536 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || |||| | | || ||||| || || | ||| || Sbjct 299537 -----GGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAACA 299591 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTG 104624 | || |||||||| | || | ||| ||| |||| | |||| | || || | Sbjct 299592 CCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTACCTGG 299651 Query 104625 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGG 104684 |||| |||||| ||| | | || ||||| ||| || ||| ||| | |||| Sbjct 299652 AGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGG 299711 Query 104685 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 || | | | | || || |||| ||| | ||||| || || || ||||||||||||| Sbjct 299712 AGCAGAGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGAG 299771 Query 104745 TTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG 104801 | |||||| | | ||||| || | ||||| || || || || || || Sbjct 299772 T---GGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGACG 299828 Query 104802 A-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 | ||| | ||| ||||||||||| || ||||| || || || | ||||| ||| | Sbjct 299829 AGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGTG 299887 Query 104861 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | | |||| ||| | || ||| | || || || ||||||| || || || Sbjct 299888 AAGAAGGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACC 299947 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 || || || |||||||||||||| |||||||| ||| ||||| || || |||| || Sbjct 299948 GGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTG 300007 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || |||||| | ||| ||||| || || ||| |||| | || ||| || ||| Sbjct 300008 GGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACGAG 300067 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 ||| || |||||||| || || ||||| ||| || ||| || Sbjct 300068 GTGGCGGTCTGTAACCTGGCCTCCATCGCCCTCAACATGTACGT 300111 >seq197 Length=1194064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 94862 |||||||| | || ||||| ||| ||||| ||||||||||| || || || ||| || Sbjct 1112580 GAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATT-TGCTGC 1112638 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || || ||||| |||||| |||| |||||||| || || ||||||||| || || || Sbjct 1112639 CATCTACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTACCTTCTCCAATGAACTCAT 1112698 Query 94923 C 94923 | Sbjct 1112699 C 1112699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583193294853160