Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq656 383 2e-101 seq258 91.5 2e-13 seq761 87.8 2e-12 >seq656 Length=490082 Score = 383 bits (424), Expect = 2e-101 Identities = 974/1461 (67%), Gaps = 57/1461 (4%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||| | ||||| | ||| Sbjct 300649 GAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTC 300590 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||| ||||| ||||| || |||||||| || | ||| || || Sbjct 300589 GTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTT 300530 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || || | ||||| |||| || | |||||| | || | | Sbjct 300529 CCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGG 300470 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | || |||||||||| || ||||| || | | | || || || | | |||| Sbjct 300469 AGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGT 300410 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTA 78797 |||||||| ||| ||| || |||||||| | ||| |||||| |||| ||| Sbjct 300409 CTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTC---CAGGGCGGCGTAGTA 300353 Query 78798 CACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT-TGGTCTCGTCGAACGA--AAG 78854 | | |||||||||| |||||||| | || | ||| || ||||||| || Sbjct 300352 GATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTT-TCGAACGGGTAAC 300294 Query 78855 GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 || | || |||||| | || |||| |||||||| ||||| |||| || |||||||| Sbjct 300293 GC--ATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCG 300236 Query 78915 CATGTTG---CTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCG 78968 ||||| |||| | || |||| ||||| |||| || |||| Sbjct 300235 TTTGTTGGACCTCTCT------GCTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCTT 300182 Query 78969 GTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATT 79028 ||||||||| | || ||| || ||| | || || || || ||| Sbjct 300181 GTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCGAAAG---- 300126 Query 79029 TCCTTTGATGAAAGTCG-----GT--AGGCACAGCGATGCCAGGTTGCACACGGCCGTCT 79081 ||| | | | | || || ||| | || |||||||| || || ||| || Sbjct 300125 TCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCT 300066 Query 79082 CGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGA 79141 ||||| ||| | ||| | ||| || ||||| | || ||||||||||||| | Sbjct 300065 CGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCA 300006 Query 79142 TGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGG 79201 ||||| ||||||||||||| ||| |||||||||||||| |||||| |||||||||| Sbjct 300005 GGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGG 299946 Query 79202 TCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGT 79261 | || |||| || || | | ||| ||| | | | | ||| || |||||||| Sbjct 299945 TTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTC- 299887 Query 79262 ACCGACCCTGTGCGA--CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATC 79319 ||| |||| | | | || | ||| | || | || ||||||| || || Sbjct 299886 ACCCTCCCT-TCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTC 299828 Query 79320 GGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTT 79379 | ||| || || ||||||| || ||||||||| |||||||| || |||| || | Sbjct 299827 GTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCT 299768 Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || |||||| ||||| |||||||||| ||| ||| ||||| | | | | |||||| Sbjct 299767 CTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTC 299708 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 | || |||| |||||| || ||||| | | || ||||||||||||||| Sbjct 299707 CTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAG 299648 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTT 79559 || |||||||| | ||| |||||| ||| ||||||| || || ||||| ||||| Sbjct 299647 GTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTT 299588 Query 79560 GTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCG 79619 |||| |||| || ||||| || || | || | || | |||||| || || ||| Sbjct 299587 GTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGAT--- 299531 Query 79620 TGTACCGCTCGCCCGAA-TGTTCGAGC--AGTGG-ATTCCGATGCCCCCGGACCACTTGG 79675 ||| | | | ||| || | ||| | | | ||||| || || | | |||| Sbjct 299530 -GTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGG 299472 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAG 79735 | ||| | ||||||| ||| || || ||||||||||||||||| ||| |||||||| | Sbjct 299471 AAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGG 299412 Query 79736 CGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCG 79795 ||| |||||||||||| |||| ||| | ||| || ||||||||||||||||| |||| Sbjct 299411 CGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCG 299352 Query 79796 TCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCG-GGAGG 79854 ||||| ||||| |||| | || ||| | ||| ||||| || || ||| | | Sbjct 299351 AGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCG-GCGTCAATG 299293 Query 79855 TCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCGTCTCGCCGAC 79913 || | |||||||| ||||||| || | ||||| | || ||| ||||| |||| | || Sbjct 299292 TCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCG-CTCGGCCAC 299234 Query 79914 ATTCAGGTAGCCCTTCTGCAG 79934 ||| || | |||| |||| Sbjct 299233 TTTCCCGTTGATCTTCAGCAG 299213 Score = 318 bits (352), Expect = 6e-82 Identities = 911/1388 (66%), Gaps = 31/1388 (2%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||| | || ||||||| ||||| || | ||| | || | Sbjct 299246 CCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGACATT----GACGC 299301 Query 19163 CGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218 ||| ||||| ||| ||||| || |||||| ||||| ||||| |||| ||||| Sbjct 299302 CGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCT 299361 Query 19219 TTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGA 19278 ||||||||||| || ||| ||||| |||| ||||| ||||| | || |||||||| Sbjct 299362 CTTCAACGCCGGGACCAACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 299421 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTC 19338 ||||||||| |||||||||||||| || || ||| ||||||| | ||| ||||| | | Sbjct 299422 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 299481 Query 19339 CGGGGGTATCGG-GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 || || ||||| | | || | ||| | |||| ||| | ||| ||| | Sbjct 299482 TGGCGGGATCGGCGTGGCGGTGAGC-TGCATCAGATCGACTGGGAGCTACATCGCTGGCA 299540 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || | || | ||||| ||||| || || | ||||||||| ||| | | Sbjct 299541 CTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAACACCGCCCGCT 299600 Query 19458 ACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 | || ||||||| ||| ||| || ||| | |||||||| ||||| ||||| |||| Sbjct 299601 ATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTACCTGGAGCCGTGGC 299660 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 || || || | || ||||| || ||| |||| || | |||||| | | Sbjct 299661 ACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAG 299720 Query 19578 GTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGG 19637 | ||||| ||| ||| ||||||| || ||||| |||||| ||| || |||| Sbjct 299721 CCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCA 299780 Query 19638 ACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCG 19697 || | || ||| ||||||||| || |||| || || || || ||| || || | Sbjct 299781 ACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGACGAGTGCTGGGGGG 299840 Query 19698 AGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCC 19757 ||| ||| | || | ||| | || | | | || || | ||||||||||| Sbjct 299841 AGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGTGAAGAAGGTGGTGA 299900 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 ||| | | | || ||| || | || || | ||| || ||||| || || |||| Sbjct 299901 AGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACCGGGACGCCCTACA 299960 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGT 19877 || |||||||||||| ||| ||| || ||| ||||| | ||| | ||||||| Sbjct 299961 TGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGT 300020 Query 19878 CGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTA 19937 |||||| || || || ||| ||||| ||| ||||||| || || |||| Sbjct 300021 GCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACGAGGTGGCGGTCTGTA 300080 Query 19938 ATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT----CCTCCTTCGACTTTGCC 19993 | ||||| ||| | ||| | | |||| | |||| | ||||||||| Sbjct 300081 ACCTGGCCTCCATCGCCCTCAACATGTACGTC-ACGCCTGAGCGGACTTTCGACTTTAAG 300139 Query 19994 AAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAAC 20053 || || | ||| ||| ||| || | || ||||| |||| || ||| Sbjct 300140 AAGCTGGCCTCGGTCACCAAGGTGATCGTGAAGAACCTGAACAAGATCATTGAGATCAAC 300199 Query 20054 TTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATC 20110 | ||||| |||| || | | | ||| || | ||||||||||| |||| |||| Sbjct 300200 TACTACCCCGTACCCGAAGCAGAG---AGGTCCAACAAACGCCACCGGCCCATCGGGATC 300256 Query 20111 GGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-A 20169 || |||||||| |||| |||| ||||| || | | | | ||||| | |||| | Sbjct 300257 GGAGTCCAGGGTTTGGCAGACGCCTTCATCCTGATGCGTTACCCGTTCGA-AAGCCCAGA 300315 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 || | |||||||| |||||||||| || | ||| |||| ||||| || Sbjct 300316 AGCTCAACTGCTCAACATCCACATCTTCGAGACCATCTACTACGCCGCCCTGGAGGCCAG 300375 Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGA 20289 |||||||| || |||| || || |||||||||| | | || || || | | | Sbjct 300376 CTGCGAACTGGCGGCAGAGCTGGGTCCTTACGAGACGTACGAAGGCTCACCTGTCAGCAA 300435 Query 20290 GGGTATCCTCCAGCCGGACATGTGGG----GCGT--CACTGAGA-ATGAGTTTTGGAGCG 20342 || ||||||||| |||||||||| | | ||| || | || | | | ||| Sbjct 300436 AGGCATCCTCCAGTACGACATGTGGGAGAAGACTCCCACCGACATGTGGGACTGGAAGC- 300494 Query 20343 CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGC 20402 || |||| ||||| | ||||| | | ||| |||| | || ||||||| Sbjct 300495 TGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGC 300554 Query 20403 CGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCA 20462 | || ||||| ||||| |||||| |||| ||||||||| | ||||| | ||||| | || Sbjct 300555 CCACGGCCTCCACCGCTCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCA 300614 Query 20463 ACATCTAC 20470 |||||||| Sbjct 300615 ACATCTAC 300622 >seq258 Length=1028905 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| |||||||||||||||||||| || || || |||||||| || || || || Sbjct 692526 CGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAACGCGG 692585 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| ||| ||||||||| || | | ||||||| Sbjct 692586 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 692635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 693269 ATCTACAGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 693328 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||||||||| || || || Sbjct 693329 AACTTCTTTGAGAAGCGGGTTGGAGAGTA 693357 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| |||||||||||||||||||| || || || |||||||| || || || ||| Sbjct 706704 GTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAACGCGGC 706645 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||||| ||| ||||||||| || | | ||||||| Sbjct 706644 CTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 706596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 705940 ATCTACAGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 705881 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 705880 AACTTCTTTGAGAAGCGCGTTGGAGAGTA 705852 >seq761 Length=414005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| ||| || ||||||||||| | || | ||||||| ||||| | Sbjct 275202 ATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 275261 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || || ||||| Sbjct 275262 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTC 275302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548461315110960