Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq656 246 3e-60 seq258 84.2 2e-11 >seq656 Length=490082 Score = 246 bits (272), Expect = 3e-60 Identities = 515/757 (68%), Gaps = 8/757 (1%) Strand=Plus/Plus Query 53210 GGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAA 53268 ||||||||||| | ||| | |||| | | |||||| ||| || | || | || Sbjct 299276 GGTATCCACGGAAAAGACATTGACGCC-GCCATTGAGACCTACAACCTGCTGTCGGAGAA 299334 Query 53269 GTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTC 53328 || || || |||||| |||||||||| |||||||| || || || | | ||| |||| Sbjct 299335 GTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGGCGCAGCTGTC 299394 Query 53329 GAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 |||||||||||| | || |||||||||||| ||||| ||||||||||| || || || Sbjct 299395 CAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAA 299454 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGTCC 53447 | |||| |||| ||| ||||| | | || || ||||| | | || | | || Sbjct 299455 GCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGGTGAGC-TGCATCA 299513 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||| || | ||| || || |||||| | || |||| | || || |||| Sbjct 299514 GATCGACTGGGAGCTACATCGCTGGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGC 299573 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | || || | ||||||||| ||||| || || |||||||||| ||||| ||| Sbjct 299574 TGCGGGTTTACAACAACACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAG 299633 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | |||||||| ||||| |||||||||||| || | | || || || |||||| Sbjct 299634 CCTTCGCCATGTACCTGGAGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGA 299693 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCG 53686 ||| || | || ||| | | | | ||||| || ||| || ||||||| || Sbjct 299694 AGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTATTCTAC-GCCATGTGGATCCCT 299752 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 ||||| |||||| | | ||||||| || |||| |||| ||||||||| || |||||| Sbjct 299753 GACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAACGAG 299812 Query 53747 TGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 || ||||| || | | ||| || || ||||||||| | || | || | || | Sbjct 299813 TGTCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACTAAATATGA 299871 Query 53806 AGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAA 53865 | | || | |||||| ||| ||||| | |||| ||| | || ||| || | Sbjct 299872 AAAGGAAGGGAGGGTGAAGAAGGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGA 299931 Query 53866 GAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 | ||| ||| || || ||||| |||||| |||||||| | |||| |||||| Sbjct 299932 GTCTCAGACGGAAACCGGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAG 299991 Query 53926 CAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||| ||||| | ||| |||||| | |||||| Sbjct 299992 CAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 300028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 339/519 (65%), Gaps = 25/519 (5%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTC 55194 |||||||||| | |||| || | || |||||||| | ||||| | | | ||| Sbjct 300172 GAACCTGAACAAGATCATTGAGATCAACTACTACCCCGTACCCGAAGCAGAGAG---GTC 300228 Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGAT 55254 |||| || ||||||||||||| ||||| || ||||| ||||| ||| |||||| | Sbjct 300229 CAACAAACGCCACCGGCCCATCGGGATCGGAGTCCAGGGTTTGGCAGACGCCTTCATCCT 300288 Query 55255 GCTCGGATTGCCCTTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-A 55310 | | | | || ||||| | | ||| |||| | | ||| |||||||| | Sbjct 300289 GATGCGTTACCCGTTCGAAAGCCCAGAA---GCTCAACTGCTCAACATCCACATCTTCGA 300345 Query 55311 GTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCT 55370 | | |||||||| || || || |||| || | ||||| || | ||| ||| Sbjct 300346 GAC-CATCTACTACGCCGCCCTGGAGGCCAGCTGCGAACTGGCGGC-AGAGCTGGGTCCT 300403 Query 55371 -ACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGC 55429 ||||||||| | | || || | ||| || | ||||||| ||| | |||| Sbjct 300404 TACGAGACGTACGAAGGCTCACCTGTCAGCAAAGGCATCCTCCAGTACGACATGTGGGAG 300463 Query 55430 AAGTCTGACCCC---ATGTTTGAC---AAGTTG---AAGCATGACATTCACTTGTGGGGC 55480 ||| || | || |||| ||| ||| || ||| | | || | ||| Sbjct 300464 AAGACTCCCACCGACATGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGC 300523 Query 55481 CTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGC 55540 | | ||| |||||| |||| || ||||| || || || || ||||||||| ||||| Sbjct 300524 GTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTGGGC 300583 Query 55541 AACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGT 55600 ||||||||| | ||||| | ||||| | |||||||||| ||| || ||| | || Sbjct 300584 AACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGA 300643 Query 55601 GAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || |||| ||||| ||||||||||| Sbjct 300644 GAGTTCCAGATCGTCAATCCTCACCTTCTCAAGGACCTG 300682 >seq258 Length=1028905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 693357 TACTCTCCAACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 693298 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 693297 AAGTCGAAGGGGTTCT 693282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547152666588200