Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq656 237 2e-57 seq761 98.7 1e-15 >seq656 Length=490082 Score = 237 bits (262), Expect = 2e-57 Identities = 917/1415 (65%), Gaps = 47/1415 (3%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || ||||||||||| ||| ||||| ||||| Sbjct 300609 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATG 300550 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 ||| | | || ||| |||| || |||||| || ||| | ||| || | || Sbjct 300549 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 300490 Query 80514 CCAAAAATCAACCCCAA--CGCTGTGAC------CCCACATGTCGTGCTGCAAGATGCCC 80565 | | || || || || || || |||||||||||| ||| | |||||| Sbjct 300489 C----AGTC--CCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCT 300436 Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG-GCCAGCTCA 80622 | | ||| || || || || |||||||||| || ||| | ||| ||||| || Sbjct 300435 TTGCTGACA--GGTGAGCCTTCGTACGTCTCGTAAGGACCCAGC-TCTGCCGCCAGTTCG 300379 Query 80623 CAC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679 || | ||||| |||| |||| || ||| ||| |||| | |||| | Sbjct 300378 CAGCTGGCCTCCA---GGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGT 300322 Query 80680 CGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 | || | |||| ||||||| | | ||||| ||||| |||| |||| ||||| Sbjct 300321 TGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGG 300262 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAA 80799 || ||||| |||| || |||||||| ||||| || | ||| || || || | ||||| Sbjct 300261 ACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAG 300202 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGT 80859 |||| | || |||| ||||||||| | ||| || || || Sbjct 300201 TAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGC 300142 Query 80860 TTCTGAAAGTCGAA--TTGGTTCCC-CTTCAC--AAATGCCGGAAGGCTCAGGGACGCCA 80914 |||| ||||||||| | | || | | || | ||| | ||| | ||| |||| Sbjct 300141 TTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTG--AGGGCGATGGAGGCCA 300084 Query 80915 GATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAATT 80972 | || || || |||||||| || || |||| ||| ||||| |||||||| | || Sbjct 300083 GGTTACAGACCGCCACCTCGTCCTTGCTGGTGTA--CTCCACGATCTCCGTGCAGAGGTT 300026 Query 80973 AGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTA 81032 |||| || || |||||||| | |||||| ||| |||||| ||||||||||| Sbjct 300025 GCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTA 299966 Query 81033 GCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCG 81092 |||||| || || ||||| || ||| |||| || |||||||| ||||| || | Sbjct 299965 AAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTG 299906 Query 81093 CGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGA 81151 ||||| |||||||| | | ||||| |||| || | ||| |||||| || | Sbjct 299905 AGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC-TCAA 299847 Query 81152 ACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGT 81211 ||| | || || || | || |||||||| || ||||||||| ||||| Sbjct 299846 ACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGT 299787 Query 81212 CGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGT 81271 | || | |||| || ||||||||| |||||||||||| | |||| ||| |||| Sbjct 299786 CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGT 299727 Query 81272 CGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGT 81331 | | | | | |||||| | || ||| || ||| || ||||| | | | Sbjct 299726 CTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACAT 299667 Query 81332 CCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC--TTGC-GACGGCCACCCTGGT 81388 | ||||| |||||||| |||| ||||| | ||| | || ||||||||||| Sbjct 299666 CAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGT 299607 Query 81389 TGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGAC 81448 || || ||||| || ||| | || |||| ||| |||| | |||| || | | Sbjct 299606 CAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGC 299547 Query 81449 CGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGC 81508 |||| || || |||| ||| | | | | ||| | | | ||||| | Sbjct 299546 CGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCC 299487 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | || | | || ||||| | || ||| | |||| ||| || || || |||||||||| Sbjct 299486 CGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGC 299427 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 | || | |||||| | |||| ||| ||||| |||| ||| | | || | ||||| | Sbjct 299426 TGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGT 299367 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCT 81688 |||| || ||||| | ||||| |||| | | |||| ||||| ||||| || Sbjct 299366 TGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAA 299307 Query 81689 TGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG- 81746 || | |||| ||| || | ||||| ||||||| | || | ||| | ||||| ||| Sbjct 299306 TGGCGGCGT-CAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGC 299248 Query 81747 GGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCA 81781 ||||| |||| | | ||| || |||||| ||| Sbjct 299247 GGGCG-CTCGGCCACTTTCCCGTTGATCTTCAGCA 299214 >seq761 Length=414005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| | || || ||||| ||||||| ||| || || || || ||||| |||| ||| Sbjct 275189 TGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTG 275248 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| | ||| |||||| |||||||||||| |||||| || ||||| ||||| ||| Sbjct 275249 GTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCTG 275308 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 |||| | |||||||| ||| | | | ||||| ||||| Sbjct 275309 CGACTCAATGATGGCGTACCACAGTTGCTGGGCCTTCACCAC 275350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570244393700080