Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq351 98.7 6e-16 >seq351 Length=862037 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| |||||| || ||||| || || || Sbjct 703947 GCCACCCCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 703888 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 703887 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 703828 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC--TTCGCTCTC 34655 | |||||||| || |||||| | || ||| | || ||||| || |||| Sbjct 703827 GATGCCCTCCTTATCCTGGATCTTA-GCCTTGACGTTCTCGATGGTGTCGCTTGGCTC-- 703771 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| || | ||| || || |||||||| | || |||||||| ||||||||||| Sbjct 703770 CACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATGTT 703717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314694084633347