Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1203 143 2e-29 seq155 143 2e-29 >seq1203 Length=218618 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||||| ||||| || ||||| |||||| |||||||||| ||||| ||| || Sbjct 1945 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTCTGTGAT 2004 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || |||| |||||||| |||||||||| ||| Sbjct 2005 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 2064 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 ||||| || || || || || ||||| ||||||||||| ||| Sbjct 2065 AACATCGCCAGCTATGCCCTTCTCACCTACATGATCGCACAT 2106 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| ||||||||||| ||||| || || || || || |||||||| |||||||||| || Sbjct 2106 ATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACC 2047 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 |||||| |||| || || || ||||| || |||||||| |||| ||| ||||| || Sbjct 2046 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTG 1987 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| |||||| ||||| || ||||| ||||| || || Sbjct 1986 GCAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGAGGTAGGTC 1945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 |||||||| ||| ||| || ||||||||||| || |||| || || | ||| || Sbjct 488 AAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGTGCCTTCCTA 547 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||| | ||| ||| || | |||||||| ||| | || || || || ||||||||| Sbjct 548 GACAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGTATGGGTTCCAG 607 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || ||||| Sbjct 608 TGGAGGCACTTTGGTGCAGAGTA 630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| |||||||||||||| || || || || | ||| |||||||| Sbjct 630 TACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCT 571 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||| || ||| | || || |||| || ||||||||||| Sbjct 570 CTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTT 511 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || ||| ||| |||||||| Sbjct 510 ACTCCCTTCTCCGATAGCTCCTT 488 >seq155 Length=1349651 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||||| ||||| || ||||| |||||| |||||||||| ||||| ||| || Sbjct 1338812 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTCTGTGAT 1338871 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || |||| |||||||| |||||||||| ||| Sbjct 1338872 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 1338931 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 ||||| || || || || || ||||| ||||||||||| ||| Sbjct 1338932 AACATCGCCAGCTATGCCCTTCTCACCTACATGATCGCACAT 1338973 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| ||||||||||| ||||| || || || || || |||||||| |||||||||| || Sbjct 1338973 ATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACC 1338914 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 |||||| |||| || || || ||||| || |||||||| |||| ||| ||||| || Sbjct 1338913 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTG 1338854 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| |||||| ||||| || ||||| ||||| || || Sbjct 1338853 GCAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGAGGTAGGTC 1338812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 |||||||| ||| ||| || ||||||||||| || |||| || || | ||| || Sbjct 1337355 AAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGTGCCTTCCTA 1337414 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||| | ||| ||| || | |||||||| ||| | || || || || ||||||||| Sbjct 1337415 GACAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGTATGGGTTCCAG 1337474 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || ||||| Sbjct 1337475 TGGAGGCACTTTGGTGCAGAGTA 1337497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| |||||||||||||| || || || || | ||| |||||||| Sbjct 1337497 TACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCT 1337438 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||| || ||| | || || |||| || ||||||||||| Sbjct 1337437 CTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTT 1337378 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || ||| ||| |||||||| Sbjct 1337377 ACTCCCTTCTCCGATAGCTCCTT 1337355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210519230480