Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1203 118 9e-22 seq155 118 9e-22 seq441 98.7 8e-16 >seq1203 Length=218618 Score = 118 bits (130), Expect = 9e-22 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || |||||||| ||||| || | |||||||||||||| || |||||||| || ||| Sbjct 2105 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 2046 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 ||||| | || | |||||| ||||| || || |||||||| || | || || ||||| Sbjct 2045 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1986 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || | ||| ||||| || || || ||||| ||| Sbjct 1985 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGA 1953 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||||||||| ||||| ||||| ||||| ||||| || || | |||| Sbjct 618 AAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCTCTCTCTGTGAAG 559 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||| | ||| | | ||| |||||||| |||||||||||||| |||||||| Sbjct 558 CCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTTACTCCCTTCTCC 499 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30166 || ||||| || | ||||| || |||| || Sbjct 498 GATAGCTCCTTTGCATTTGTTGATCCCTGTG 468 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||| ||||||| |||||| |||| || |||||||| ||| | ||| || Sbjct 1857 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 1798 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 1797 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 1753 >seq155 Length=1349651 Score = 118 bits (130), Expect = 9e-22 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || |||||||| ||||| || | |||||||||||||| || |||||||| || ||| Sbjct 1338972 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 1338913 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 ||||| | || | |||||| ||||| || || |||||||| || | || || ||||| Sbjct 1338912 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1338853 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || | ||| ||||| || || || ||||| ||| Sbjct 1338852 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGA 1338820 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||||||||| ||||| ||||| ||||| ||||| || || | |||| Sbjct 1337485 AAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCTCTCTCTGTGAAG 1337426 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||| | ||| | | ||| |||||||| |||||||||||||| |||||||| Sbjct 1337425 CCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTTACTCCCTTCTCC 1337366 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30166 || ||||| || | ||||| || |||| || Sbjct 1337365 GATAGCTCCTTTGCATTTGTTGATCCCTGTG 1337335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||| ||||||| |||||| |||| || |||||||| ||| | ||| || Sbjct 1338724 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 1338665 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 1338664 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 1338620 >seq441 Length=723953 Score = 98.7 bits (108), Expect = 8e-16 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 |||||||||||| |||| ||| | || ||| |||| ||||| ||||| || ||||| || Sbjct 619371 CTCCCTGCTGAGAACTATGTTGATCCGGTCCTTCAGGGGTCTGTTCTTCTCCGGGATTGA 619312 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGC 114385 |||||| ||||| || ||||| |||||||| |||||| Sbjct 619311 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTGC 619275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406117366894474