Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1203 134 1e-26 seq155 134 1e-26 >seq1203 Length=218618 Score = 134 bits (148), Expect = 1e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || |||||||| ||||| || | |||||||||||||| || || ||||| || ||| Sbjct 2105 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 2046 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| |||| | |||||| |||||||| || ||||||||||| | || || ||||| Sbjct 2045 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1986 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || | ||||||||| || || |||||||| || Sbjct 1985 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1954 Score = 129 bits (142), Expect = 4e-25 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||||| || || |||||||| |||||||| ||||| ||||| ||||| Sbjct 640 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 581 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 580 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 521 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 27660 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 520 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 468 >seq155 Length=1349651 Score = 134 bits (148), Expect = 1e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || |||||||| ||||| || | |||||||||||||| || || ||||| || ||| Sbjct 1338972 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 1338913 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| |||| | |||||| |||||||| || ||||||||||| | || || ||||| Sbjct 1338912 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1338853 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || | ||||||||| || || |||||||| || Sbjct 1338852 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1338821 Score = 129 bits (142), Expect = 4e-25 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||||| || || |||||||| |||||||| ||||| ||||| ||||| Sbjct 1337507 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 1337448 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 1337447 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 1337388 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 27660 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 1337387 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 1337335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465503306429