Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq656 417 1e-111 seq761 104 3e-17 >seq656 Length=490082 Score = 417 bits (462), Expect = 1e-111 Identities = 1275/1963 (65%), Gaps = 27/1963 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || ||||||| || ||| || | | | || || |||||||| Sbjct 300717 TTCTTCATCTCCTCGTTCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTG 300658 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || ||||| || | || || || ||||| || || ||||| || | || Sbjct 300657 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 300598 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || ||||| || || || || ||||| || |||| || Sbjct 300597 ATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGC 300538 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || ||| | ||| || || || || ||||| ||||| | Sbjct 300537 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATG 300478 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || || ||| || Sbjct 300477 TCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCT 300418 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || ||||| || |||| | || ||||| || || || |||| || Sbjct 300417 TCGTACGTCTCGTAAGGACCCAGCTCTG---CCGCCAGTTCGCAGCTGGCCTCCAGGGCG 300361 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || ||||| || | | ||||| ||| ||||| || || ||| Sbjct 300360 GCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTTTCGAAC 300301 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | || || ||||| ||||| || ||||| ||||| || || || || | Sbjct 300300 GGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCCGG 300241 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | || ||||| | | ||||| || | || || || || || || || || || Sbjct 300240 TGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTG 300181 Query 77598 TTGAGATTTCTAACAACTACTTTA---ACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 || || || | || | || || ||| | || || || ||| || || | Sbjct 300180 TTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCC---AGCTTCTTAAAGTCGAAAGTC 300124 Query 77655 CCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 | || | || ||||||| | || || || || || ||||| || || ||||| Sbjct 300123 CGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCG 300064 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | | ||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 300063 TCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGG 300004 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 || || ||||||||||| | ||||| | |||||| ||||| || | || ||||||||| Sbjct 300003 TTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTT 299944 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGT 77889 || |||| || ||||| || | | ||| || || || ||| || | || || Sbjct 299943 TCCGTCTGAGACTCGATGATGGCGTACCAAAC--CTGCTGAGCCTTCACCACCTTCTTCA 299886 Query 77890 ATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949 | || || ||||||||| ||| || ||| ||||| || || ||||| || | Sbjct 299885 CCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGT 299826 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 ||| || || || || || || ||||||| |||||||| | || |||| | Sbjct 299825 CCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCT 299766 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| || || ||||| ||||| | || ||||| |||| || ||| || || || | Sbjct 299765 TCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCT 299706 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 ||||||| ||||| || || || || || || | | |||| | ||||| || || || | Sbjct 299705 TTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGT 299646 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || | |||| ||||| || || || ||||| || | ||| | ||||||||| | Sbjct 299645 ACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGT 299586 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | ||||| | || ||| || | | || || || | || || || |||| || || | Sbjct 299585 TGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGATGTAGC 299526 Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309 | ||| | | | || || | | | || || || || || || || || | Sbjct 299525 TCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGA 299466 Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369 | ||||| | |||| || |||||||| ||||| || ||||||||| ||||| || | Sbjct 299465 GGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCA 299406 Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 | || ||||| |||| || | || || || || || | || || || || | Sbjct 299405 GGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGT 299346 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | || ||||| || || || || || ||||| || ||||| || | || ||||| | Sbjct 299345 GGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTC 299286 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 || || || |||| || | ||| | ||| ||||| || | || || || | Sbjct 299285 CGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGT 299226 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | || |||| || || || |||| ||||| || ||||| ||||||| ||||| | Sbjct 299225 TGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAAT 299166 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669 |||| || ||||| || ||||| || ||||||| | ||| || || | | Sbjct 299165 CTCTGTCATAAATGATGGAGGAATTGAGGCGGTCTTTGTTCTCCAGAACGATGTCGAGGG 299106 Query 78670 CAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT----AGGATTAACATAGTTAAAT 78725 | || || || || || | ||||| | ||| || || ||||| | Sbjct 299105 TCTGCTTGGAGATCATGGGGGAGTGG----CATTTGTTCAGAGGGTTGACGTAGTTGTAC 299050 Query 78726 AAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCT 78785 | |||||||| || || || |||| ||| || || |||||||| || || || || || Sbjct 299049 AGGTCTTCCATCACTTCGCTGAATACTTTCTTGGTCTCCTTGTGAAGGTTGGAGACGGCA 298990 Query 78786 ATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCT 78845 || || || || || || || || || || || | || || ||||| || || || Sbjct 298989 ATCCTGGCGGCGAGGATGGCGTAGTCCGGGTGCTTGGTCGTCAGGGTGGCCGCGATCTCC 298930 Query 78846 GCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTC 78905 || |||| | |||| ||| | || ||||| || | || | || || || || ||| Sbjct 298929 GCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTC 298870 Query 78906 ATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATA 78965 |||| ||| | | | ||||| || || || | |||| || || || | || ||| Sbjct 298869 ATGGTGATCTGGGCCGGATCCACGAAGTCTGCATTCAGACCGTAGCAGAGCTTCTGGATA 298810 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || || ||||||||||| || || || ||||| || ||||| Sbjct 298809 CGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 298767 >seq761 Length=414005 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| ||||||||||||| |||||||| | |||||| || | || || || || | Sbjct 272658 CCAGCTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCGATGT 272717 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 |||| || | |||||||| ||||||||| ||| || | ||| || ||||| || | | Sbjct 272718 GAATGTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGA 272777 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 ||||| || | |||||||||| ||||| | | || || ||||||||||| Sbjct 272778 CAGTCTTCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAATATCATCTGG 272832 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| || ||| || || || ||||| || ||||||| |||||||||||||| ||||| Sbjct 275192 ATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTT 275251 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 | |||| | ||||| | |||||| || || || | ||||| || || || |||| || Sbjct 275252 GGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCTGCGA 275311 Query 77843 TTCGATAAT 77851 || || || Sbjct 275312 CTCAATGAT 275320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694588400769760