Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq656 423 3e-113 seq761 105 1e-17 >seq656 Length=490082 Score = 423 bits (468), Expect = 3e-113 Identities = 1300/1993 (65%), Gaps = 27/1993 (1%) Strand=Plus/Minus Query 75626 TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTC 75685 |||||||||||| | | || | | | ||||| ||||| || ||||||| | | Sbjct 300747 TGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCCGC 300688 Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 || || | | | || || |||||||| || || || || ||||| || | || || Sbjct 300687 TCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTG 300628 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 || ||||| || || ||||| || | || | || || ||||| |||| || ||||| Sbjct 300627 CGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCG 300568 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 75865 || || || || ||||| || |||| || | || || || | || ||| | ||| Sbjct 300567 GTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATC 300508 Query 75866 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTA--CAACATCCCAGAGATCGT 75923 || || || || ||||| ||||| | || | ||| | | | ||||| | |||| Sbjct 300507 TTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGG-TGGGAGTCTTC-TCCCACATGTCGT 300450 Query 75924 ATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTT 75983 | || || || || ||||| || ||| || | || || ||||||| || || | Sbjct 300449 ACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTG 300390 Query 75984 CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 | || |||||||| || ||||| | || |||| || || || ||||| || | | | Sbjct 300389 CCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGT 300330 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | || ||| ||||| | || || || || ||| | | || || || || ||||| | Sbjct 300329 TGAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCA 300270 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 ||||| ||||| || || || || | || | || ||||| | || ||||| || | Sbjct 300269 AACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTA 300210 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTA---ACCA 76220 ||||| || || || || || || || || || || | || | || || ||| Sbjct 300209 CGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCG 300150 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC---ACAAACATATTAAGAGCTA 76277 | || || || ||| || || | | || | || |||| || || || | Sbjct 300149 AGGCC---AGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGA 300093 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGT 76335 | || || || ||||| || || ||||| | | || ||| || | | |||||||| Sbjct 300092 TGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGC--TGGTGTACTCCACGATCTCCGT 300035 Query 76336 GCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGA 76395 ||| || || || |||||||| || || || || || ||||||||||| |||| || | Sbjct 300034 GCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 299975 Query 76396 GTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCA 76455 |||||| ||||| | | || || || ||||| |||| || ||||| || | | ||| Sbjct 299974 GTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCA 299915 Query 76456 GACGACT-CT-AGCTTTTATTATAGATTTGTA--TCGCTTCTCTCTTTCATATTGTGTAT 76511 || || || ||| || | | || || |||| || ||||||||| || | Sbjct 299914 AAC--CTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTC-CT-TTTCATATTTAGTGT 299859 Query 76512 ATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACA 76571 | | | ||||| || || ||||| || |||| || ||||| || || ||||||| Sbjct 299858 AGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACA 299799 Query 76572 TCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAG 76631 ||| ||||| || | || || | ||||| || || ||||| ||||| | | Sbjct 299798 TCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGG 299739 Query 76632 CAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGA 76691 | ||||| |||| || ||| | || || |||||||| ||||| || || || |||| Sbjct 299738 CGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA 299679 Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 | || | | |||| | ||||| || || || || || || | | |||||||| || | Sbjct 299678 AGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGT 299619 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 | || ||||| || | ||| | ||| ||||| || ||||| | || ||| || | | | Sbjct 299618 TGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCC 299559 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | || || | || || || |||| || || || ||| | | || || | | Sbjct 299558 CATTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCG 299499 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | ||| || || || || ||| || || || || || | |||| ||||| |||| Sbjct 299498 CCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGA 299439 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 ||||||| || || |||||| ||||| || || || ||||| |||| || | Sbjct 299438 TGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGT 299379 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 || || || || || | || || || || || |||||||| || || || || || | Sbjct 299378 TGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGT 299319 Query 77052 TGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||| || ||||| | || || || || | || || || || | || | ||| | Sbjct 299318 TGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGA 299259 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| ||||| || || || | || || || |||| || || || |||| Sbjct 299258 GCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCA 299199 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||| || ||||| ||||||| ||||| ||||| || ||||| || ||||| | Sbjct 299198 GGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGA 299139 Query 77232 GTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGTAGAAATAATTGGAGA-TCGT 77290 | ||| || | | ||| || || | | | || || || || || | | Sbjct 299138 GGCGGTCTTTGTTCTCCAGAACGATGTCGAGGGTCTGCTTGGAGATCATGGGGGAGTGGC 299079 Query 77291 ATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttt 77350 ||| || ||| || || ||||| | | ||||||||| || ||||| |||| ||| Sbjct 299078 ATT-TGTTCAGAGGGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTC 299020 Query 77351 tttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGA 77410 || || |||||||| || || || ||||| || || || || || || || ||||| || Sbjct 299019 TTGGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGG 298960 Query 77411 TGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTA 77470 || | || || |||||| || || || || |||| || |||| || | || || Sbjct 298959 TGCTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTG 298900 Query 77471 ACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCG 77530 || ||| | || | || || || || ||||||| || | | ||||| || || || Sbjct 298899 ACGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCT 298840 Query 77531 GTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTC 77590 | |||| ||| || || | || ||||| || ||||||||||| |||||||| | Sbjct 298839 GCATTCAGACCGTAGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGACGCGC 298780 Query 77591 TCCTTACATCCAT 77603 |||| | ||||| Sbjct 298779 TCCTGGCGTCCAT 298767 >seq761 Length=414005 Score = 105 bits (116), Expect = 1e-17 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| ||||||||||||| |||||||| | |||||| || | || || || || | Sbjct 272658 CCAGCTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCGATGT 272717 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 |||| || | |||||||| ||||||||| ||| || | ||| || ||||| || | | Sbjct 272718 GAATGTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGA 272777 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT 75617 ||||| || | |||||||||| ||||| | | || || ||||||||||| ||| Sbjct 272778 CAGTCTTCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAATATCATCTGG--GAT 272835 Query 75618 TT 75619 || Sbjct 272836 TT 272837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712851886754880