Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq351 118 2e-21 >seq351 Length=862037 Score = 118 bits (130), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || ||||| || ||||||||||| |||| | || Sbjct 703941 CCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 703882 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 703881 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 703822 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||||| |||| | | |||| ||| || ||||| Sbjct 703821 CTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAG 703762 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || ||||| |||||||| |||| |||||| || Sbjct 703761 GGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATGTT 703717 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| ||||||||||| |||||||||||||| | | ||| || | Sbjct 686705 CCATCTTCCAGCTGCTTT--CCGGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCT 686648 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| ||||| || || || ||| | || | | |||| ||| || || || | Sbjct 686647 CCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGG 686588 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||| ||||| || || ||||||| ||||||||| Sbjct 686587 TGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTT 686545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153683921156789