Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq351 131 1e-25 >seq351 Length=862037 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| |||| || ||| | || ||| Sbjct 703928 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 703869 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | || | || ||||| ||| Sbjct 703868 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 703809 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||||||| | |||||||| | || || ||||| Sbjct 703808 ATCTTAGCCTTGAC-GTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTT 703750 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||| ||||| |||||| Sbjct 703749 ACCGGTGAGGGTCTTCACAAAGATCTGCATG 703719 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| ||||| ||||||| | |||||| || | || | || ||||| Sbjct 686702 TCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 686643 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || ||||| ||||| || | ||||||||| || |||||||||| || || Sbjct 686642 TCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 686583 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| || |||||||| ||||| Sbjct 686582 GTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 686548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359949777220803