Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq139 185 1e-41 seq747 122 1e-22 seq235 95.1 2e-14 >seq139 Length=1410976 Score = 185 bits (204), Expect = 1e-41 Identities = 204/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 8315 ACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT 8374 |||||| | ||||| || ||| | | ||| | |||||||| |||| || || | Sbjct 1333426 ACGTTGTTGCAGACGAGCCTCTGCAGCGAGGCGGTGTTGACGATGTCGAAGCCGACTGCG 1333367 Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || |||||||||||||||||||||||| ||||||||||||| ||| |||| | |||| Sbjct 1333366 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATTCCCCATCAAGCCT 1333307 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| |||||||||| || | || |||| || ||||||||||| | ||| Sbjct 1333306 TTGAGGGAGAAAGGAGCCCCCATTTCCACCATCGTCTCCCCAAAGATGGCGTTCTGTCGG 1333247 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||||||||||| | || | ||| |||||||| || || || || ||||| || || Sbjct 1333246 GGCTTTTCCACCAGCAGCCCTGGGTAAAGCTCCACGGCGTCAACATCGCCGTACAGCTCC 1333187 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | | ||| || || || || |||||||| Sbjct 1333186 TCCAATATGGCGGCCATTTCTTTGTCTCCTGT 1333155 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| |||||||| ||| |||||| ||| || || || Sbjct 1331887 TCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTCAGGGTGA 1331828 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| || || ||||| ||||||||||| | ||||| || |||||||||||| Sbjct 1331827 ACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGCGTACATC 1331768 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || |||||||| |||||||| || || ||||| Sbjct 1331767 ATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 1331727 >seq747 Length=423565 Score = 122 bits (134), Expect = 1e-22 Identities = 184/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||| || |||| ||||||||||| || ||||| ||| ||| ||||||| Sbjct 384546 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 384605 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||| | || ||||| ||||||||||||||||||||||||||||| |||| Sbjct 384606 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 384665 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GG 9410 | || || |||| || || || |||| ||||||| || ||||| |||| | || Sbjct 384666 GTCAGGCCTGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG-TTGTTCAGGAGG 384724 Query 9411 CA---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 | |||| ||| || | ||||||||| |||| ||| || || || ||||| Sbjct 384725 GAAACCTTC---AGGGTACACCATGTGCACTGGGACCTCTGATACACTTGGAGGGTACAT 384781 Query 9468 TTCACCGTCAATCATCTG 9485 || || | |||||||| Sbjct 384782 CTCCCCATTTATCATCTG 384799 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| ||| ||| || || || | ||| | | |||| ||| | Sbjct 379934 GGACACCACTTGGTGTTCAGACAAACCAGTTTCTTTAGAGTGGACGTTTTGATGATGTTG 379993 Query 8363 AACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 || ||| |||| || |||||||| || |||||||||||| | |||||| |||| || Sbjct 379994 AAGCCC--GTCTGGCCTCCGAAGGTACTAGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 380051 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | | | | |||||| ||||||||||| || |||| ||| | || ||||| || || | Sbjct 380052 TTCCAAGTAAGCCTTTCAGGGAGAACGGGGCGCCCATCTCCACCATACTCTCTCCAAATA 380111 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 ||| ||| || || | || |||| || || Sbjct 380112 TGGAGTTAGGTCGTGTTTTCTCCAGCAGGA 380141 >seq235 Length=1098308 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| || || | || || || ||||||||||||||||| | || || Sbjct 962505 TTTACGATGTCGAAGCCGACTTTGCCTCCAAATGTGCTGGGCTTCCAGTATTCTGGAGAA 962446 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||||||||||||||| |||||||| |||| || | ||||| Sbjct 962445 CATATGGGGTTTCCCAGGAGGCCTTTGAGGGAAAACGGAGCACCCATTTCCACCATGCTT 962386 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 | || |||||||| || || | ||| |||| || || || | || | || | | Sbjct 962385 TGTCCAAAGATGGCCCCCGGTCGAGTCTTCTCCAGCAGTAACCCAGGATAAAATTCAAGA 962326 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 || || | || || ||||| Sbjct 962325 GCGTCAATATCACCATAAAG 962306 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||| || ||||||||||| || ||||||||| ||| ||| || Sbjct 954943 TCACCTATGATGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTTGGGTGC 954884 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| || || || || ||||| || || || ||||| | ||||| |||| | Sbjct 954883 TCTGCTTTCAGGACGTCACAGACTCTGTTATGCTCTCTAAGCCACAGCGTGGCATACAAC 954824 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || || || |||| ||||| | |||| | | | | | || Sbjct 954823 CCCAAACCAGGGAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCTGCAGGG 954764 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | ||||| ||| |||| | ||| | | || | | |||||| |||||||| Sbjct 954763 ATCCCAGGAGGGTAGCTCATCTTCACAGGAGCATCAGCTATGGTGGGGGGGTACATTTCT 954704 Query 9472 CCGTCAATCATCTG 9485 || | || ||||| Sbjct 954703 CCATTGATTATCTG 954690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716793830471360