Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq351 134 3e-26 >seq351 Length=862037 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 703723 CAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAGCCAAGC--- 703779 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||||||||| ||||| ||||| || || || ||||| || |||||| Sbjct 703780 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 703839 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 703840 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 703899 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 703900 ATCCAGAAGGAGTCCACCCTCCACCTGGT 703928 Score = 116 bits (128), Expect = 9e-21 Identities = 127/166 (77%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 686545 AAAATGC---AGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA- 686600 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || || || ||||| || || || || || ||||| | Sbjct 686601 -GCCCAGCGACACCATTGAAAATGTGAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCC 686659 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | |||||||| | || |||||||||||||| ||||| |||||||| Sbjct 686660 CTGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGATGG 686705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203588400239246