Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq351 138 1e-27 >seq351 Length=862037 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 703937 AGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 703878 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 703877 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 703818 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | |||||||| | ||||||||| | || Sbjct 703817 TTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTG 703758 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || ||||| || || ||||||||||| Sbjct 703757 ATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATGTT 703717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 ||||| |||||||| | || || |||||||| |||||||| ||||| | ||| ||||| Sbjct 686720 TCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCA 686661 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809 | ||| | || |||||| || ||| || ||||| | |||||||| | | Sbjct 686660 GGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGC 686601 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||| || || || || || || || || || ||||| |||||||| || Sbjct 686600 TCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTT 686545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462250494090800