Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq40 98.7 1e-15 seq24 87.8 2e-12 seq39 84.2 2e-11 >seq40 Length=23490330 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || | || ||||||||||||||||| ||||| |||||||| ||||| Sbjct 14324455 ATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGCAATCTGG 14324514 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 |||||||| ||||| |||||||| | || ||| |||||| Sbjct 14324515 AATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTCC 14324553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || || || || | || ||||| ||||| |||| Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||| || || | || || |||||||||||||| || || || || | ||||| | Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010 Query 17106 C 17106 | Sbjct 14324011 C 14324011 >seq24 Length=12449181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || || | || | ||||||||| |||| ||||| Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||| | || || || || || ||||| ||||| || || || || | |||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 17106 CGATTAATCGTTC 17118 | | |||||| || Sbjct 10123757 CTACTAATCGCTC 10123769 >seq39 Length=16255708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 16629 CATCCAATGAAAATGTGTTATCT-TGTTTATGAACA--ACACCCATTCTTTGGTAATCGC 16685 |||||| | || ||||||||| || | | ||| || ||||| | ||||| |||| Sbjct 10355560 CATCCAGTCTGAAAGTGTTATCTGTGGGTCCGGACATGACTCCCATCCGCTGGTACTCGC 10355619 Query 16686 TAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAA 16745 || || || || |||||||| || |||||||| | || |||||||||||||| |||| Sbjct 10355620 CTACTCGCTTCTCAAAAAAGTTGGTCTTGCCCTCCAAGGAAATATTCTCCATGAAGTCAA 10355679 Query 16746 AAGGATT 16752 ||||||| Sbjct 10355680 AAGGATT 10355686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || || || || | || ||||| ||||| |||| Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||| || || | || || |||||||||||||| || || || || | ||||| | Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477 Query 17106 C 17106 | Sbjct 10356478 C 10356478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 10356920 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 10356979 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || ||||| ||||| |||||||| | | ||| || ||| Sbjct 10356980 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACCTCC 10357018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517484930717040