Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq39 105 8e-18 seq230 102 1e-16 seq40 102 1e-16 seq24 96.9 4e-15 seq32 87.8 2e-12 >seq39 Length=16255708 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477 Query 24277 C 24277 | Sbjct 10356478 C 10356478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 10357388 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 10357447 Query 24705 AAAATAACAAA 24715 ||||| ||||| Sbjct 10357448 AAAATGACAAA 10357458 >seq230 Length=1256464 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 1149137 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 1149089 >seq40 Length=23490330 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010 Query 24277 C 24277 | Sbjct 14324011 C 14324011 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || |||||||| ||||| |||||||| || || |||||||| ||||| Sbjct 14324448 ATCTTTGATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGC 14324507 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || || ||||||||||| || | || || || | || ||||| Sbjct 14324508 AATCTGGAATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTC 14324552 >seq24 Length=12449181 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 24277 C 24277 | Sbjct 10123757 C 10123757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||||| | Sbjct 10126977 CACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGG 10127036 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| || ||||| ||||| ||||||| ||||| |||| Sbjct 10127037 ATACTGGATTGGGAAAATGACAAATCGCTTTGGGTTTT 10127074 >seq32 Length=26100072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| || || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 10136387 ATATTTACCTCCTCGACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 10136446 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || |||| ||||| |||||||| ||||||| || || |||| Sbjct 10136447 TCGGGATACTGAATAGGAAAAATGACAAATCGCTTCGGGTTTT 10136489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652000985440