Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3984 111 2e-19 seq11 98.7 1e-15 seq566 82.4 9e-11 >seq3984 Length=151364 Score = 111 bits (122), Expect = 2e-19 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | ||| | | ||||||||| |||||||||| |||||||| | | ||| ||| Sbjct 81877 CCGTCCGGACCGATGAGGAACTTCTCAAAGTTCCAGGAGACGTCGTTCCTGTTCACCGGA 81818 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCAT-GTCGTCGCTAGGCGCCGG 83244 |||| |||| | ||| || | || | | | || |||||| || ||| || Sbjct 81817 CTCCAGATGATGAATTTGGGATCACCCATCAAGGA-CACAGAGTCGTCACTGGGCTGAGG 81759 Query 83245 CAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302 ||| | |||| | ||||| |||| || || || || | |||||||| || || | Sbjct 81758 CAG--CTTCTCCTTGAGGAACACGAACAGAGGGTGGGCGTTCGCACCGTTCACTTCCAGC 81701 Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 ||||| | || || || ||||||||||| || ||||||||||||| |||||| || Sbjct 81700 TTCTCCAGAAGTTGGAAATTTGGCTCGAAGCCATTTCCAGGACGGACGTACTTCAGAGAT 81641 Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGA 83398 ||| || || |||||| ||| || ||||| ||| Sbjct 81640 AGCAGAATTTCATCATTCTTGGCATTCTCCTGTTGA 81605 >seq11 Length=19054100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 |||||||| || ||||| || |||||||| | ||||| |||| ||| |||| | | | Sbjct 6526449 AACTTCTCAAAATTCCAAGCGACGTCGTTTCTGCACAATGGACTCCACACAATAAATTTG 6526508 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 |||||| ||| || | | || ||||| || || || ||| |||||| Sbjct 6526509 GGGTCGTTCATGAAGGGCATTGGCTCATCGCTCGGGAATGGAAGTTTCTCCTTGAGGAAG 6526568 Query 83264 GCGAAGAGCGGATGTGCC-CTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 |||||| || || || ||| | ||||| || || |||||| |||||| || || Sbjct 6526569 AGGAAGAGAGGGTGAGCGGCTTTC-CCGTTCACGTCAACCTTCTCCAAGAGCTGGAATTT 6526627 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 || || ||||| || ||||||||||| | ||||| ||| || | |||||| |||| || Sbjct 6526628 AGGTTCAAAGCCATTGCCAGGACGGACATACTTCAAGGACGGAAGGATCTCTTCATT-TG 6526686 Query 83383 GGC-GTTTTCCT 83393 | |||||||| Sbjct 6526687 TACAGTTTTCCT 6526698 >seq566 Length=653796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 ||||||||||| ||||| || | |||||| | |||||| ||| ||| | || | | | Sbjct 160161 AACTTCTCGAAATTCCAAGCGATGTCGTTTCTGCACACGGGACTCCAAACGATAAATTTG 160102 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 ||||| ||| || | | || ||||| || || || ||| |||||| Sbjct 160101 GGGTCATTCATGAAAGGCATTGGCTCATCGCTCGGGAATGGAAGTTTCTCCTTAAGGAAG 160042 Query 83264 GCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTC 83323 ||||||| || || || || |||| || ||| |||||| || ||| || || Sbjct 160041 ACGAAGAGAGGGTGAGCGGTTTTCCCGTC-ACGTCGACCTTCTCCAAAAGCTGGAATTTA 159983 Query 83324 GGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGG 83383 || || ||||| || ||||||||||| | ||| | ||| || | |||||| |||| || Sbjct 159982 GGTTCAAAGCCATTGCCAGGACGGACATACTTTAAGGACGGAAGGATCTCTTCATT-TGT 159924 Query 83384 GC-GTTTTCCT 83393 | |||||||| Sbjct 159923 ACAGTTTTCCT 159913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608725433795120