Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10 125 6e-24 >seq10 Length=22665327 Score = 125 bits (138), Expect = 6e-24 Identities = 161/216 (75%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||||| ||||||||||| || ||||| ||||| | ||| || | | || Sbjct 4886440 AGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCT 4886381 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC--TTGT 21081 |||||||||||||| ||| | || || |||||||||| || ||| | ||||||| |||| Sbjct 4886380 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGT-CAGGGGAATGCCTTCCTTTTGT 4886322 Query 21082 CGGCGATCTTTTGT--TTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAAT 21139 | | ||| |||||| || || | | | || |||| ||||| || | || || Sbjct 4886321 CTG-GAT-TTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGAT 4886264 Query 21140 GGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| || | ||||||||||| || ||||| Sbjct 4886263 GGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422210938148648