Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 141 1e-28 seq40 102 8e-17 seq39 87.8 2e-12 seq32 86.0 6e-12 seq24 82.4 8e-11 >seq10 Length=22665327 Score = 141 bits (156), Expect = 1e-28 Identities = 173/231 (75%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| |||||||| | || || || | | Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAA--GAGGGCATCCCCGCGGAC 40806 |||| | | | |||| ||||||| |||| || |||||| || ||||| ||| | ||| Sbjct 4886288 GACACCATTGAGAACG-TCAAGGACAAAAATCCAGACAAAAGGAAGGCATTCCC-CTGAC 4886345 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || |||||||||||||| || | ||||| || |||||| Sbjct 4886346 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTAC 4886405 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| ||||||| ||| |||| | ||||| ||| Sbjct 4886406 AACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGC 4886456 >seq40 Length=23490330 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| |||||||||| ||| || || |||||||| || || |||| ||| Sbjct 14325021 GAGCCCCTTCTGAAGGAGAACCCCCACCGCTTTGTCATTTTCCCAATTCAGTACCATGAC 14324962 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 14324961 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCAGAGGAGGTG 14324908 >seq39 Length=16255708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || |||||||||| || ||| | || || || ||||||||||| || || Sbjct 10357036 GGTGGAGCGATTTACTCAGGAGGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCA 10356977 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| |||||||| ||| | ||||| |||||||| Sbjct 10356976 GATTGCCATGGAAAACATACACTCTGAAATGTA 10356944 >seq32 Length=26100072 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 116808 AGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCG 116867 |||| ||| ||| ||||||||| | | ||||| || | ||||||||||||||||||| Sbjct 10135593 AGCGGTTCAGTCAAGAGGTGCAGATCCCAGAGGCTCGATCCTTCTACGGCTTTCAGATCC 10135534 Query 116868 CCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || |||||||| ||||| |||||||| | |||||| |||| ||| Sbjct 10135533 TTATAGAGAACGTACACTCTGAAATGTACAGCATGCTCATCAACACCTAC 10135484 >seq24 Length=12449181 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 116808 AGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCG 116867 |||| ||| ||| ||||||||| | | || || || | ||||||||||||||||||| Sbjct 10124409 AGCGGTTCAGTCAAGAGGTGCAGATCCCAGAAGCTCGCTCCTTCTACGGCTTTCAGATCC 10124350 Query 116868 CCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| ||||| |||||||| |||||||| Sbjct 10124349 TCATAGAGAATGTGCACTCCGAAATGTA 10124322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515158803429280