Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq309 95.1 2e-14 seq30 95.1 2e-14 >seq309 Length=442048 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| |||||| |||||| || || || ||| | || | |||| || || Sbjct 136149 GATAGCGTCAGCACTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 136208 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 || ||||| | ||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 136209 GTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTCCTGCACGTCTATCACCACTG 136268 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 || ||||| | || | ||||| || || || ||| || |||| || ||| Sbjct 136269 CACAATGTTCATCCTGTGGTGGATCGGCATCAAGTGGGTTCCTGGTGGACAG 136320 >seq30 Length=18521859 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| ||| |||||| |||||| || || || ||| | || | |||| || || Sbjct 12815091 GATAGCGTCAGCGCTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 12815032 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 || ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || | Sbjct 12815031 CTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTTCTGCACGTCTATCACCACTG 12814972 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 || ||||| | || | ||||| || || || ||| || |||| || ||| Sbjct 12814971 CACAATGTTCATCCTGTGGTGGATTGGCATCAAGTGGGTTCCTGGTGGACAG 12814920 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| ||| |||||| |||||| || || || ||| | || | |||| || || Sbjct 12815707 GATAGCGTCAGCGCTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 12815648 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 || ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || | Sbjct 12815647 CTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTTCTGCACGTCTATCACCACTG 12815588 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 || ||||| | || | ||||| || || || ||| || |||| || ||| Sbjct 12815587 CACAATGTTCATCCTGTGGTGGATTGGCATCAAGTGGGTTCCTGGTGGACAG 12815536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923088578255120