Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 8e-15 >seq10 Length=22665327 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || || || || ||||| ||||||||||| ||||| || | || Sbjct 4886441 CAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 4886382 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT--G 34294 |||| ||| ||||| || || || |||| ||||||||| | ||| | || ||||| | Sbjct 4886381 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTC-AGGGGAATGCCTTCCTTTTG 4886323 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || | | || | ||| | | | || | || | | || || || | |||||| Sbjct 4886322 TCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATG 4886263 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| ||||| ||||| ||||||||||||||| Sbjct 4886262 GTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 4886227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323035074687680