Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq39 82.4 7e-11 >seq39 Length=16255708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 ||| || | | || || || || || | || || || || || || || ||||| |||| Sbjct 10356349 AATTCATTACCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTC 10356408 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 ||| || || | ||| || |||| ||||| || ||||||||||| || ||||| || | Sbjct 10356409 CTCTCTTCTTTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAG 10356468 Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392 | ||||| || |||| || ||| || Sbjct 10356469 CAGCAAAAGCCACCACTCTCTCCCC 10356493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462457782030800