Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 >seq10 Length=22665327 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||| ||| ||||||||| ||||||||||| |||| |||| | || ||| Sbjct 4886437 ACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCC 4886378 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCC--TTGTCCG 45245 || ||||| || || || |||| || ||| ||||| || || | || ||| ||||| | Sbjct 4886377 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTTTGTCTG 4886319 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 | |||| | ||| || | | | | |||| | ||| ||||| | || || |||| Sbjct 4886318 GATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCT 4886259 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || |||||||| ||||| Sbjct 4886258 TGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395030045126938