Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10 102 6e-17 >seq10 Length=22665327 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || || || || ||||||||||| | | Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||||| |||||||| ||| |||| || || || || | || ||| Sbjct 4886395 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGT-CAGGGGA 4886337 Query 18219 ACGCCTTCC--TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||| || || | | ||| | |||||| | ||| ||||||| ||||| Sbjct 4886336 ATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAA 4886277 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 |||| |||||| | ||||| || | ||||| ||||| || ||||| | | ||| Sbjct 4886276 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTATTAAC 4886220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379300643114610