Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq445 113 4e-20 seq230 91.5 1e-13 >seq445 Length=552131 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||||||||| || || | || || || || || ||||||| || |||| Sbjct 60566 GTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGG 60507 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 || ||||| || ||||| | |||||||||||||||||| || ||||| ||||| ||| Sbjct 60506 TTACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCAGTCTCTGTCTGA 60447 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| ||||| || ||||| Sbjct 60446 GACTCAATGATGGCATACCACA 60425 >seq230 Length=1256464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| |||||||| ||||||| || | |||| ||| |||||| ||| | || |||| Sbjct 1148788 CACCTGAAACTCTCCGGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 1148729 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 || |||||||||||||| |||||||| || || || || ||||| || |||| ||| || Sbjct 1148728 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 1148669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445714145033760